Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2836

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2835 and Echvi_2836 are separated by 260 nucleotidesEchvi_2836 and Echvi_2837 are separated by 48 nucleotidesEchvi_2837 and Echvi_2838 overlap by 4 nucleotides Echvi_2835: Echvi_2835 - RND family efflux transporter, MFP subunit, at 3,395,814 to 3,397,100 _2835 Echvi_2836: Echvi_2836 - hypothetical protein, at 3,397,361 to 3,398,230 _2836 Echvi_2837: Echvi_2837 - hypothetical protein, at 3,398,279 to 3,399,187 _2837 Echvi_2838: Echvi_2838 - Cytosine/adenosine deaminases, at 3,399,184 to 3,399,621 _2838 Position (kb) 3397 3398 3399Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3396.437 kb on + strand, within Echvi_2835at 3396.448 kb on + strand, within Echvi_2835at 3396.449 kb on - strand, within Echvi_2835at 3396.624 kb on + strand, within Echvi_2835at 3396.647 kb on + strand, within Echvi_2835at 3396.728 kb on - strand, within Echvi_2835at 3396.778 kb on - strand, within Echvi_2835at 3396.913 kb on + strand, within Echvi_2835at 3396.913 kb on + strand, within Echvi_2835at 3397.003 kb on + strandat 3397.004 kb on - strandat 3397.135 kb on - strandat 3397.193 kb on + strandat 3397.194 kb on - strandat 3397.218 kb on + strandat 3397.234 kb on + strandat 3397.234 kb on + strandat 3397.234 kb on + strandat 3397.235 kb on - strandat 3397.235 kb on - strandat 3397.283 kb on + strandat 3397.283 kb on + strandat 3397.300 kb on + strandat 3397.301 kb on - strandat 3397.331 kb on + strandat 3397.357 kb on + strandat 3397.358 kb on - strandat 3397.363 kb on - strandat 3397.372 kb on + strandat 3397.373 kb on - strandat 3397.373 kb on - strandat 3397.373 kb on - strandat 3397.384 kb on + strandat 3397.384 kb on + strandat 3397.389 kb on - strandat 3397.418 kb on + strandat 3397.517 kb on + strand, within Echvi_2836at 3397.539 kb on + strand, within Echvi_2836at 3397.540 kb on - strand, within Echvi_2836at 3397.550 kb on + strand, within Echvi_2836at 3397.551 kb on - strand, within Echvi_2836at 3397.599 kb on + strand, within Echvi_2836at 3397.600 kb on - strand, within Echvi_2836at 3397.724 kb on + strand, within Echvi_2836at 3397.725 kb on - strand, within Echvi_2836at 3397.790 kb on + strand, within Echvi_2836at 3397.790 kb on + strand, within Echvi_2836at 3397.866 kb on + strand, within Echvi_2836at 3397.866 kb on + strand, within Echvi_2836at 3397.933 kb on + strand, within Echvi_2836at 3397.951 kb on + strand, within Echvi_2836at 3397.976 kb on - strand, within Echvi_2836at 3398.029 kb on + strand, within Echvi_2836at 3398.030 kb on - strand, within Echvi_2836at 3398.137 kb on + strand, within Echvi_2836at 3398.281 kb on - strandat 3398.340 kb on - strandat 3398.377 kb on - strand, within Echvi_2837at 3398.377 kb on - strand, within Echvi_2837at 3398.382 kb on - strand, within Echvi_2837at 3398.382 kb on - strand, within Echvi_2837at 3398.382 kb on - strand, within Echvi_2837at 3398.382 kb on - strand, within Echvi_2837at 3398.382 kb on - strand, within Echvi_2837at 3398.383 kb on + strand, within Echvi_2837at 3398.512 kb on - strand, within Echvi_2837at 3398.539 kb on + strand, within Echvi_2837at 3398.540 kb on - strand, within Echvi_2837at 3398.551 kb on - strand, within Echvi_2837at 3398.652 kb on + strand, within Echvi_2837at 3398.736 kb on + strand, within Echvi_2837at 3398.760 kb on + strand, within Echvi_2837at 3398.761 kb on - strand, within Echvi_2837at 3398.762 kb on + strand, within Echvi_2837at 3398.847 kb on + strand, within Echvi_2837at 3398.848 kb on - strand, within Echvi_2837at 3398.848 kb on - strand, within Echvi_2837at 3398.849 kb on + strand, within Echvi_2837at 3398.868 kb on - strand, within Echvi_2837at 3398.913 kb on + strand, within Echvi_2837at 3398.913 kb on + strand, within Echvi_2837at 3398.914 kb on - strand, within Echvi_2837at 3398.917 kb on + strand, within Echvi_2837at 3398.951 kb on + strand, within Echvi_2837at 3398.951 kb on + strand, within Echvi_2837at 3399.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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3,396,437 + Echvi_2835 0.48 +1.4
3,396,448 + Echvi_2835 0.49 -0.9
3,396,449 - Echvi_2835 0.49 +0.1
3,396,624 + Echvi_2835 0.63 -1.5
3,396,647 + Echvi_2835 0.65 -1.2
3,396,728 - Echvi_2835 0.71 +0.7
3,396,778 - Echvi_2835 0.75 -0.1
3,396,913 + Echvi_2835 0.85 +0.5
3,396,913 + Echvi_2835 0.85 -1.9
3,397,003 + -0.3
3,397,004 - +0.4
3,397,135 - +0.5
3,397,193 + +0.8
3,397,194 - -0.8
3,397,218 + +0.5
3,397,234 + +0.8
3,397,234 + +0.8
3,397,234 + -0.1
3,397,235 - -0.9
3,397,235 - -1.2
3,397,283 + +0.1
3,397,283 + -0.1
3,397,300 + +0.2
3,397,301 - -0.7
3,397,331 + -2.8
3,397,357 + -0.3
3,397,358 - -1.1
3,397,363 - -0.5
3,397,372 + -0.9
3,397,373 - -0.1
3,397,373 - -0.3
3,397,373 - -1.1
3,397,384 + +0.9
3,397,384 + +0.1
3,397,389 - +0.1
3,397,418 + -0.8
3,397,517 + Echvi_2836 0.18 -0.7
3,397,539 + Echvi_2836 0.20 +0.2
3,397,540 - Echvi_2836 0.21 -2.3
3,397,550 + Echvi_2836 0.22 +1.0
3,397,551 - Echvi_2836 0.22 -0.3
3,397,599 + Echvi_2836 0.27 -1.2
3,397,600 - Echvi_2836 0.27 -1.1
3,397,724 + Echvi_2836 0.42 -0.1
3,397,725 - Echvi_2836 0.42 -1.3
3,397,790 + Echvi_2836 0.49 -0.1
3,397,790 + Echvi_2836 0.49 -0.7
3,397,866 + Echvi_2836 0.58 +0.6
3,397,866 + Echvi_2836 0.58 -1.3
3,397,933 + Echvi_2836 0.66 -0.9
3,397,951 + Echvi_2836 0.68 -0.9
3,397,976 - Echvi_2836 0.71 -1.4
3,398,029 + Echvi_2836 0.77 -0.7
3,398,030 - Echvi_2836 0.77 -0.7
3,398,137 + Echvi_2836 0.89 -0.1
3,398,281 - -0.2
3,398,340 - -0.5
3,398,377 - Echvi_2837 0.11 -0.9
3,398,377 - Echvi_2837 0.11 -0.1
3,398,382 - Echvi_2837 0.11 -0.8
3,398,382 - Echvi_2837 0.11 -0.3
3,398,382 - Echvi_2837 0.11 -0.3
3,398,382 - Echvi_2837 0.11 +0.1
3,398,382 - Echvi_2837 0.11 -1.4
3,398,383 + Echvi_2837 0.11 -0.7
3,398,512 - Echvi_2837 0.26 -0.2
3,398,539 + Echvi_2837 0.29 +0.5
3,398,540 - Echvi_2837 0.29 -0.7
3,398,551 - Echvi_2837 0.30 -1.2
3,398,652 + Echvi_2837 0.41 -0.7
3,398,736 + Echvi_2837 0.50 +0.8
3,398,760 + Echvi_2837 0.53 +0.1
3,398,761 - Echvi_2837 0.53 -0.3
3,398,762 + Echvi_2837 0.53 -0.3
3,398,847 + Echvi_2837 0.62 -0.2
3,398,848 - Echvi_2837 0.63 +1.7
3,398,848 - Echvi_2837 0.63 -2.5
3,398,849 + Echvi_2837 0.63 -0.6
3,398,868 - Echvi_2837 0.65 +1.1
3,398,913 + Echvi_2837 0.70 -0.6
3,398,913 + Echvi_2837 0.70 -0.0
3,398,914 - Echvi_2837 0.70 +1.9
3,398,917 + Echvi_2837 0.70 +0.1
3,398,951 + Echvi_2837 0.74 -1.3
3,398,951 + Echvi_2837 0.74 +0.4
3,399,155 - -0.6

Or see this region's nucleotide sequence