Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2833

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2832 and Echvi_2833 are separated by 158 nucleotidesEchvi_2833 and Echvi_2834 are separated by 9 nucleotides Echvi_2832: Echvi_2832 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 3,392,783 to 3,393,610 _2832 Echvi_2833: Echvi_2833 - L-serine dehydratase, iron-sulfur-dependent, beta subunit, at 3,393,769 to 3,394,446 _2833 Echvi_2834: Echvi_2834 - Outer membrane protein, at 3,394,456 to 3,395,802 _2834 Position (kb) 3393 3394 3395Strain fitness (log2 ratio) -2 -1 0 1 2at 3392.812 kb on + strandat 3392.842 kb on + strandat 3392.843 kb on - strandat 3392.850 kb on - strandat 3392.850 kb on - strandat 3392.853 kb on + strandat 3392.853 kb on + strandat 3392.853 kb on + strandat 3392.854 kb on - strandat 3392.875 kb on + strand, within Echvi_2832at 3392.875 kb on + strand, within Echvi_2832at 3392.951 kb on + strand, within Echvi_2832at 3392.952 kb on - strand, within Echvi_2832at 3393.014 kb on - strand, within Echvi_2832at 3393.015 kb on + strand, within Echvi_2832at 3393.015 kb on + strand, within Echvi_2832at 3393.015 kb on + strand, within Echvi_2832at 3393.080 kb on - strand, within Echvi_2832at 3393.138 kb on + strand, within Echvi_2832at 3393.152 kb on + strand, within Echvi_2832at 3393.199 kb on + strand, within Echvi_2832at 3393.206 kb on - strand, within Echvi_2832at 3393.221 kb on + strand, within Echvi_2832at 3393.250 kb on + strand, within Echvi_2832at 3393.313 kb on + strand, within Echvi_2832at 3393.436 kb on + strand, within Echvi_2832at 3393.656 kb on + strandat 3393.681 kb on + strandat 3393.692 kb on + strandat 3393.704 kb on + strandat 3393.725 kb on + strandat 3393.725 kb on + strandat 3393.725 kb on + strandat 3393.732 kb on + strandat 3393.738 kb on - strandat 3393.742 kb on + strandat 3393.742 kb on + strandat 3393.742 kb on + strandat 3393.757 kb on + strandat 3393.758 kb on - strandat 3393.768 kb on + strandat 3393.769 kb on - strandat 3393.934 kb on + strand, within Echvi_2833at 3393.934 kb on + strand, within Echvi_2833at 3393.934 kb on + strand, within Echvi_2833at 3393.935 kb on - strand, within Echvi_2833at 3394.048 kb on - strand, within Echvi_2833at 3394.127 kb on + strand, within Echvi_2833at 3394.128 kb on - strand, within Echvi_2833at 3394.167 kb on + strand, within Echvi_2833at 3394.263 kb on + strand, within Echvi_2833at 3394.368 kb on + strand, within Echvi_2833at 3394.383 kb on + strandat 3394.388 kb on - strandat 3394.399 kb on - strandat 3394.424 kb on - strandat 3394.424 kb on - strandat 3394.424 kb on - strandat 3394.442 kb on + strandat 3394.442 kb on + strandat 3394.443 kb on - strandat 3394.450 kb on + strandat 3394.455 kb on + strandat 3394.481 kb on + strandat 3394.524 kb on + strandat 3394.533 kb on + strandat 3394.534 kb on - strandat 3394.534 kb on - strandat 3394.551 kb on + strandat 3394.625 kb on + strand, within Echvi_2834at 3394.626 kb on - strand, within Echvi_2834at 3394.641 kb on + strand, within Echvi_2834at 3394.641 kb on + strand, within Echvi_2834at 3394.681 kb on + strand, within Echvi_2834at 3394.682 kb on - strand, within Echvi_2834at 3394.683 kb on + strand, within Echvi_2834at 3394.684 kb on - strand, within Echvi_2834at 3394.684 kb on - strand, within Echvi_2834at 3394.684 kb on - strand, within Echvi_2834at 3394.775 kb on + strand, within Echvi_2834at 3394.775 kb on + strand, within Echvi_2834at 3394.775 kb on + strand, within Echvi_2834at 3394.775 kb on + strand, within Echvi_2834at 3394.775 kb on + strand, within Echvi_2834at 3394.775 kb on + strand, within Echvi_2834at 3394.776 kb on - strand, within Echvi_2834at 3394.776 kb on - strand, within Echvi_2834at 3394.776 kb on - strand, within Echvi_2834at 3394.776 kb on - strand, within Echvi_2834at 3394.776 kb on - strand, within Echvi_2834at 3394.776 kb on - strand, within Echvi_2834at 3394.776 kb on - strand, within Echvi_2834at 3394.777 kb on + strand, within Echvi_2834at 3394.777 kb on + strand, within Echvi_2834at 3394.777 kb on + strand, within Echvi_2834at 3394.778 kb on - strand, within Echvi_2834at 3394.797 kb on + strand, within Echvi_2834at 3394.797 kb on + strand, within Echvi_2834at 3394.798 kb on - strand, within Echvi_2834at 3394.866 kb on + strand, within Echvi_2834at 3394.866 kb on + strand, within Echvi_2834at 3394.866 kb on + strand, within Echvi_2834at 3394.867 kb on - strand, within Echvi_2834at 3394.870 kb on - strand, within Echvi_2834at 3394.901 kb on + strand, within Echvi_2834at 3394.922 kb on + strand, within Echvi_2834at 3395.117 kb on + strand, within Echvi_2834at 3395.117 kb on + strand, within Echvi_2834at 3395.170 kb on + strand, within Echvi_2834at 3395.171 kb on - strand, within Echvi_2834at 3395.171 kb on - strand, within Echvi_2834at 3395.171 kb on - strand, within Echvi_2834at 3395.172 kb on + strand, within Echvi_2834at 3395.172 kb on + strand, within Echvi_2834at 3395.270 kb on - strand, within Echvi_2834at 3395.270 kb on - strand, within Echvi_2834at 3395.270 kb on - strand, within Echvi_2834at 3395.277 kb on - strand, within Echvi_2834at 3395.316 kb on - strand, within Echvi_2834at 3395.335 kb on - strand, within Echvi_2834at 3395.339 kb on - strand, within Echvi_2834at 3395.396 kb on + strand, within Echvi_2834at 3395.396 kb on + strand, within Echvi_2834at 3395.397 kb on - strand, within Echvi_2834at 3395.404 kb on - strand, within Echvi_2834at 3395.426 kb on + strand, within Echvi_2834at 3395.433 kb on + strand, within Echvi_2834at 3395.433 kb on + strand, within Echvi_2834at 3395.434 kb on - strand, within Echvi_2834at 3395.434 kb on - strand, within Echvi_2834

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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3,392,812 + -0.4
3,392,842 + -0.5
3,392,843 - -0.2
3,392,850 - -0.2
3,392,850 - -1.0
3,392,853 + -0.4
3,392,853 + -1.1
3,392,853 + -1.1
3,392,854 - -0.1
3,392,875 + Echvi_2832 0.11 +0.2
3,392,875 + Echvi_2832 0.11 +0.5
3,392,951 + Echvi_2832 0.20 -0.7
3,392,952 - Echvi_2832 0.20 -0.2
3,393,014 - Echvi_2832 0.28 +1.7
3,393,015 + Echvi_2832 0.28 +0.0
3,393,015 + Echvi_2832 0.28 +1.9
3,393,015 + Echvi_2832 0.28 +0.8
3,393,080 - Echvi_2832 0.36 -0.9
3,393,138 + Echvi_2832 0.43 -0.3
3,393,152 + Echvi_2832 0.45 -0.4
3,393,199 + Echvi_2832 0.50 +1.7
3,393,206 - Echvi_2832 0.51 +0.1
3,393,221 + Echvi_2832 0.53 +0.9
3,393,250 + Echvi_2832 0.56 -1.9
3,393,313 + Echvi_2832 0.64 +0.8
3,393,436 + Echvi_2832 0.79 -1.9
3,393,656 + -1.0
3,393,681 + +0.3
3,393,692 + -0.4
3,393,704 + -1.5
3,393,725 + -0.1
3,393,725 + -0.0
3,393,725 + +0.4
3,393,732 + -0.5
3,393,738 - -0.1
3,393,742 + -0.2
3,393,742 + +0.9
3,393,742 + +0.3
3,393,757 + -0.2
3,393,758 - -1.4
3,393,768 + +0.1
3,393,769 - -2.7
3,393,934 + Echvi_2833 0.24 -1.5
3,393,934 + Echvi_2833 0.24 -0.1
3,393,934 + Echvi_2833 0.24 -0.5
3,393,935 - Echvi_2833 0.24 -2.2
3,394,048 - Echvi_2833 0.41 -1.2
3,394,127 + Echvi_2833 0.53 -1.1
3,394,128 - Echvi_2833 0.53 -1.4
3,394,167 + Echvi_2833 0.59 -1.5
3,394,263 + Echvi_2833 0.73 -1.3
3,394,368 + Echvi_2833 0.88 -0.9
3,394,383 + -1.6
3,394,388 - -1.5
3,394,399 - +1.0
3,394,424 - -1.8
3,394,424 - -1.4
3,394,424 - -1.5
3,394,442 + +0.9
3,394,442 + +0.4
3,394,443 - -1.2
3,394,450 + -0.7
3,394,455 + -1.0
3,394,481 + +0.3
3,394,524 + -0.3
3,394,533 + +0.5
3,394,534 - +1.0
3,394,534 - +1.2
3,394,551 + -1.2
3,394,625 + Echvi_2834 0.13 +0.3
3,394,626 - Echvi_2834 0.13 -0.3
3,394,641 + Echvi_2834 0.14 -0.9
3,394,641 + Echvi_2834 0.14 +0.4
3,394,681 + Echvi_2834 0.17 +1.9
3,394,682 - Echvi_2834 0.17 -0.3
3,394,683 + Echvi_2834 0.17 +0.8
3,394,684 - Echvi_2834 0.17 +0.1
3,394,684 - Echvi_2834 0.17 +0.1
3,394,684 - Echvi_2834 0.17 +0.9
3,394,775 + Echvi_2834 0.24 -0.6
3,394,775 + Echvi_2834 0.24 +0.5
3,394,775 + Echvi_2834 0.24 -0.4
3,394,775 + Echvi_2834 0.24 -0.1
3,394,775 + Echvi_2834 0.24 +0.3
3,394,775 + Echvi_2834 0.24 -0.3
3,394,776 - Echvi_2834 0.24 +0.4
3,394,776 - Echvi_2834 0.24 -0.8
3,394,776 - Echvi_2834 0.24 -0.7
3,394,776 - Echvi_2834 0.24 +0.0
3,394,776 - Echvi_2834 0.24 -0.7
3,394,776 - Echvi_2834 0.24 -0.0
3,394,776 - Echvi_2834 0.24 +2.5
3,394,777 + Echvi_2834 0.24 -0.3
3,394,777 + Echvi_2834 0.24 -0.3
3,394,777 + Echvi_2834 0.24 -0.6
3,394,778 - Echvi_2834 0.24 +0.6
3,394,797 + Echvi_2834 0.25 +0.0
3,394,797 + Echvi_2834 0.25 -0.1
3,394,798 - Echvi_2834 0.25 -0.2
3,394,866 + Echvi_2834 0.30 -0.9
3,394,866 + Echvi_2834 0.30 -0.5
3,394,866 + Echvi_2834 0.30 +0.2
3,394,867 - Echvi_2834 0.31 -0.1
3,394,870 - Echvi_2834 0.31 -0.2
3,394,901 + Echvi_2834 0.33 -0.6
3,394,922 + Echvi_2834 0.35 +0.9
3,395,117 + Echvi_2834 0.49 +0.4
3,395,117 + Echvi_2834 0.49 -0.4
3,395,170 + Echvi_2834 0.53 -0.0
3,395,171 - Echvi_2834 0.53 -0.7
3,395,171 - Echvi_2834 0.53 +0.9
3,395,171 - Echvi_2834 0.53 +0.9
3,395,172 + Echvi_2834 0.53 -1.4
3,395,172 + Echvi_2834 0.53 +0.2
3,395,270 - Echvi_2834 0.60 +0.1
3,395,270 - Echvi_2834 0.60 +0.7
3,395,270 - Echvi_2834 0.60 +0.6
3,395,277 - Echvi_2834 0.61 +0.1
3,395,316 - Echvi_2834 0.64 -0.1
3,395,335 - Echvi_2834 0.65 +0.6
3,395,339 - Echvi_2834 0.66 +0.6
3,395,396 + Echvi_2834 0.70 -0.0
3,395,396 + Echvi_2834 0.70 -0.3
3,395,397 - Echvi_2834 0.70 -0.2
3,395,404 - Echvi_2834 0.70 +1.5
3,395,426 + Echvi_2834 0.72 -0.7
3,395,433 + Echvi_2834 0.73 -0.3
3,395,433 + Echvi_2834 0.73 -0.2
3,395,434 - Echvi_2834 0.73 +0.2
3,395,434 - Echvi_2834 0.73 +0.3

Or see this region's nucleotide sequence