Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2350

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2349 and Echvi_2350 are separated by 3 nucleotidesEchvi_2350 and Echvi_2351 are separated by 44 nucleotides Echvi_2349: Echvi_2349 - Zn-ribbon protein, possibly nucleic acid-binding, at 2,786,538 to 2,787,314 _2349 Echvi_2350: Echvi_2350 - dinuclear metal center protein, YbgI/SA1388 family, at 2,787,318 to 2,788,418 _2350 Echvi_2351: Echvi_2351 - tetraacyldisaccharide 4'-kinase, at 2,788,463 to 2,789,530 _2351 Position (kb) 2787 2788 2789Strain fitness (log2 ratio) -2 -1 0 1at 2786.341 kb on - strandat 2786.370 kb on + strandat 2786.370 kb on + strandat 2786.371 kb on - strandat 2786.372 kb on + strandat 2786.434 kb on - strandat 2786.442 kb on - strandat 2786.445 kb on + strandat 2786.499 kb on - strandat 2787.579 kb on - strand, within Echvi_2350at 2787.737 kb on - strand, within Echvi_2350at 2787.737 kb on - strand, within Echvi_2350at 2787.777 kb on + strand, within Echvi_2350at 2787.797 kb on - strand, within Echvi_2350at 2787.797 kb on - strand, within Echvi_2350at 2787.816 kb on + strand, within Echvi_2350at 2787.816 kb on + strand, within Echvi_2350at 2787.817 kb on - strand, within Echvi_2350at 2787.817 kb on - strand, within Echvi_2350at 2787.860 kb on + strand, within Echvi_2350at 2787.864 kb on - strand, within Echvi_2350at 2787.927 kb on - strand, within Echvi_2350at 2788.175 kb on - strand, within Echvi_2350at 2788.175 kb on - strand, within Echvi_2350at 2788.175 kb on - strand, within Echvi_2350at 2788.388 kb on - strandat 2788.403 kb on + strandat 2788.412 kb on + strandat 2788.413 kb on - strandat 2788.418 kb on + strandat 2788.418 kb on + strandat 2788.418 kb on + strandat 2788.419 kb on - strandat 2788.419 kb on - strandat 2788.419 kb on - strandat 2788.419 kb on - strandat 2788.420 kb on + strandat 2788.420 kb on + strandat 2788.420 kb on + strandat 2788.421 kb on - strandat 2788.482 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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2,786,341 - -0.2
2,786,370 + +0.4
2,786,370 + +0.1
2,786,371 - -0.4
2,786,372 + +0.8
2,786,434 - -1.2
2,786,442 - +1.2
2,786,445 + +0.3
2,786,499 - +0.8
2,787,579 - Echvi_2350 0.24 -0.8
2,787,737 - Echvi_2350 0.38 -0.6
2,787,737 - Echvi_2350 0.38 -1.5
2,787,777 + Echvi_2350 0.42 -1.5
2,787,797 - Echvi_2350 0.44 -1.3
2,787,797 - Echvi_2350 0.44 +1.2
2,787,816 + Echvi_2350 0.45 -1.3
2,787,816 + Echvi_2350 0.45 -1.8
2,787,817 - Echvi_2350 0.45 -1.3
2,787,817 - Echvi_2350 0.45 -0.4
2,787,860 + Echvi_2350 0.49 -1.0
2,787,864 - Echvi_2350 0.50 -0.1
2,787,927 - Echvi_2350 0.55 +0.9
2,788,175 - Echvi_2350 0.78 -0.0
2,788,175 - Echvi_2350 0.78 +0.4
2,788,175 - Echvi_2350 0.78 -1.5
2,788,388 - -0.3
2,788,403 + +0.8
2,788,412 + +0.3
2,788,413 - -1.8
2,788,418 + -0.2
2,788,418 + -0.8
2,788,418 + -0.0
2,788,419 - +0.2
2,788,419 - -0.4
2,788,419 - +1.0
2,788,419 - -0.5
2,788,420 + +0.9
2,788,420 + +0.0
2,788,420 + +0.8
2,788,421 - -0.8
2,788,482 + +0.6

Or see this region's nucleotide sequence