Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2264

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2263 and Echvi_2264 are separated by 66 nucleotidesEchvi_2264 and Echvi_2265 are separated by 10 nucleotidesEchvi_2265 and Echvi_2266 are separated by 1 nucleotides Echvi_2263: Echvi_2263 - HD superfamily phosphohydrolases, at 2,680,735 to 2,681,964 _2263 Echvi_2264: Echvi_2264 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,682,031 to 2,683,593 _2264 Echvi_2265: Echvi_2265 - ATPase, YjeE family, at 2,683,604 to 2,684,026 _2265 Echvi_2266: Echvi_2266 - Alanine dehydrogenase, at 2,684,028 to 2,685,245 _2266 Position (kb) 2682 2683 2684Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2681.051 kb on - strand, within Echvi_2263at 2681.052 kb on + strand, within Echvi_2263at 2681.172 kb on + strand, within Echvi_2263at 2681.173 kb on - strand, within Echvi_2263at 2681.174 kb on + strand, within Echvi_2263at 2681.263 kb on + strand, within Echvi_2263at 2681.263 kb on + strand, within Echvi_2263at 2681.264 kb on - strand, within Echvi_2263at 2681.283 kb on + strand, within Echvi_2263at 2681.283 kb on + strand, within Echvi_2263at 2681.303 kb on + strand, within Echvi_2263at 2681.304 kb on - strand, within Echvi_2263at 2681.316 kb on - strand, within Echvi_2263at 2681.328 kb on + strand, within Echvi_2263at 2681.347 kb on + strand, within Echvi_2263at 2681.347 kb on + strand, within Echvi_2263at 2681.354 kb on + strand, within Echvi_2263at 2681.354 kb on + strand, within Echvi_2263at 2681.355 kb on - strand, within Echvi_2263at 2681.374 kb on + strand, within Echvi_2263at 2681.375 kb on - strand, within Echvi_2263at 2681.392 kb on - strand, within Echvi_2263at 2681.471 kb on + strand, within Echvi_2263at 2681.531 kb on + strand, within Echvi_2263at 2681.532 kb on - strand, within Echvi_2263at 2681.535 kb on + strand, within Echvi_2263at 2681.552 kb on - strand, within Echvi_2263at 2681.575 kb on + strand, within Echvi_2263at 2681.645 kb on + strand, within Echvi_2263at 2681.646 kb on - strand, within Echvi_2263at 2681.679 kb on + strand, within Echvi_2263at 2681.680 kb on - strand, within Echvi_2263at 2681.680 kb on - strand, within Echvi_2263at 2681.728 kb on - strand, within Echvi_2263at 2681.917 kb on - strandat 2681.944 kb on - strandat 2681.985 kb on - strandat 2682.027 kb on + strandat 2682.074 kb on + strandat 2682.128 kb on + strandat 2682.128 kb on + strandat 2682.129 kb on - strandat 2682.129 kb on - strandat 2682.154 kb on - strandat 2682.460 kb on + strand, within Echvi_2264at 2682.460 kb on + strand, within Echvi_2264at 2682.460 kb on + strand, within Echvi_2264at 2682.460 kb on + strand, within Echvi_2264at 2682.499 kb on + strand, within Echvi_2264at 2682.499 kb on + strand, within Echvi_2264at 2682.612 kb on - strand, within Echvi_2264at 2682.793 kb on + strand, within Echvi_2264at 2682.793 kb on + strand, within Echvi_2264at 2682.794 kb on - strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.821 kb on - strand, within Echvi_2264at 2682.821 kb on - strand, within Echvi_2264at 2682.821 kb on - strand, within Echvi_2264at 2682.824 kb on - strand, within Echvi_2264at 2682.824 kb on - strand, within Echvi_2264at 2682.829 kb on - strand, within Echvi_2264at 2682.830 kb on + strand, within Echvi_2264at 2682.843 kb on + strand, within Echvi_2264at 2682.931 kb on - strand, within Echvi_2264at 2682.942 kb on + strand, within Echvi_2264at 2682.942 kb on + strand, within Echvi_2264at 2682.942 kb on + strand, within Echvi_2264at 2682.943 kb on - strand, within Echvi_2264at 2683.008 kb on + strand, within Echvi_2264at 2683.009 kb on - strand, within Echvi_2264at 2683.009 kb on - strand, within Echvi_2264at 2683.231 kb on - strand, within Echvi_2264at 2683.341 kb on - strand, within Echvi_2264at 2683.345 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.458 kb on - strandat 2683.489 kb on + strandat 2683.507 kb on + strandat 2683.507 kb on + strandat 2683.574 kb on + strandat 2683.586 kb on + strandat 2684.037 kb on - strandat 2684.054 kb on + strandat 2684.054 kb on + strandat 2684.055 kb on - strandat 2684.071 kb on - strandat 2684.189 kb on - strand, within Echvi_2266at 2684.198 kb on + strand, within Echvi_2266at 2684.199 kb on - strand, within Echvi_2266at 2684.202 kb on - strand, within Echvi_2266at 2684.262 kb on + strand, within Echvi_2266at 2684.263 kb on - strand, within Echvi_2266at 2684.285 kb on - strand, within Echvi_2266at 2684.285 kb on - strand, within Echvi_2266at 2684.289 kb on + strand, within Echvi_2266at 2684.290 kb on - strand, within Echvi_2266at 2684.290 kb on - strand, within Echvi_2266at 2684.364 kb on - strand, within Echvi_2266at 2684.364 kb on - strand, within Echvi_2266at 2684.421 kb on + strand, within Echvi_2266at 2684.421 kb on + strand, within Echvi_2266at 2684.421 kb on + strand, within Echvi_2266at 2684.422 kb on - strand, within Echvi_2266at 2684.422 kb on - strand, within Echvi_2266at 2684.423 kb on + strand, within Echvi_2266at 2684.423 kb on + strand, within Echvi_2266at 2684.424 kb on - strand, within Echvi_2266at 2684.481 kb on - strand, within Echvi_2266at 2684.485 kb on + strand, within Echvi_2266at 2684.486 kb on - strand, within Echvi_2266at 2684.521 kb on + strand, within Echvi_2266at 2684.521 kb on + strand, within Echvi_2266at 2684.528 kb on + strand, within Echvi_2266at 2684.528 kb on + strand, within Echvi_2266at 2684.528 kb on + strand, within Echvi_2266

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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2,681,051 - Echvi_2263 0.26 -0.2
2,681,052 + Echvi_2263 0.26 -1.5
2,681,172 + Echvi_2263 0.36 +0.9
2,681,173 - Echvi_2263 0.36 +0.9
2,681,174 + Echvi_2263 0.36 -1.4
2,681,263 + Echvi_2263 0.43 +0.4
2,681,263 + Echvi_2263 0.43 -0.4
2,681,264 - Echvi_2263 0.43 -1.2
2,681,283 + Echvi_2263 0.45 -1.0
2,681,283 + Echvi_2263 0.45 +0.5
2,681,303 + Echvi_2263 0.46 -0.3
2,681,304 - Echvi_2263 0.46 -1.0
2,681,316 - Echvi_2263 0.47 +1.0
2,681,328 + Echvi_2263 0.48 +0.0
2,681,347 + Echvi_2263 0.50 +0.7
2,681,347 + Echvi_2263 0.50 -1.3
2,681,354 + Echvi_2263 0.50 +1.4
2,681,354 + Echvi_2263 0.50 +1.0
2,681,355 - Echvi_2263 0.50 -1.8
2,681,374 + Echvi_2263 0.52 -0.3
2,681,375 - Echvi_2263 0.52 -0.5
2,681,392 - Echvi_2263 0.53 -0.2
2,681,471 + Echvi_2263 0.60 +0.9
2,681,531 + Echvi_2263 0.65 +0.1
2,681,532 - Echvi_2263 0.65 +0.2
2,681,535 + Echvi_2263 0.65 +1.4
2,681,552 - Echvi_2263 0.66 -1.3
2,681,575 + Echvi_2263 0.68 -0.3
2,681,645 + Echvi_2263 0.74 +0.3
2,681,646 - Echvi_2263 0.74 -0.1
2,681,679 + Echvi_2263 0.77 -0.5
2,681,680 - Echvi_2263 0.77 -0.6
2,681,680 - Echvi_2263 0.77 -0.1
2,681,728 - Echvi_2263 0.81 +0.0
2,681,917 - -0.1
2,681,944 - -1.3
2,681,985 - -0.6
2,682,027 + -0.3
2,682,074 + -0.6
2,682,128 + +0.4
2,682,128 + -1.0
2,682,129 - +0.2
2,682,129 - -2.4
2,682,154 - -2.2
2,682,460 + Echvi_2264 0.27 -0.9
2,682,460 + Echvi_2264 0.27 -1.7
2,682,460 + Echvi_2264 0.27 -0.3
2,682,460 + Echvi_2264 0.27 -1.0
2,682,499 + Echvi_2264 0.30 -0.4
2,682,499 + Echvi_2264 0.30 +0.6
2,682,612 - Echvi_2264 0.37 +0.0
2,682,793 + Echvi_2264 0.49 -0.7
2,682,793 + Echvi_2264 0.49 -1.5
2,682,794 - Echvi_2264 0.49 -0.1
2,682,820 + Echvi_2264 0.50 +0.2
2,682,820 + Echvi_2264 0.50 -1.5
2,682,820 + Echvi_2264 0.50 -0.4
2,682,820 + Echvi_2264 0.50 -0.7
2,682,821 - Echvi_2264 0.51 +0.1
2,682,821 - Echvi_2264 0.51 -1.6
2,682,821 - Echvi_2264 0.51 -1.0
2,682,824 - Echvi_2264 0.51 -0.5
2,682,824 - Echvi_2264 0.51 +2.7
2,682,829 - Echvi_2264 0.51 -0.2
2,682,830 + Echvi_2264 0.51 -0.8
2,682,843 + Echvi_2264 0.52 +1.7
2,682,931 - Echvi_2264 0.58 -1.8
2,682,942 + Echvi_2264 0.58 -1.8
2,682,942 + Echvi_2264 0.58 -2.1
2,682,942 + Echvi_2264 0.58 -0.7
2,682,943 - Echvi_2264 0.58 -1.5
2,683,008 + Echvi_2264 0.63 -0.9
2,683,009 - Echvi_2264 0.63 -0.0
2,683,009 - Echvi_2264 0.63 -1.0
2,683,231 - Echvi_2264 0.77 -1.2
2,683,341 - Echvi_2264 0.84 -0.4
2,683,345 + Echvi_2264 0.84 -0.9
2,683,347 + Echvi_2264 0.84 -1.3
2,683,347 + Echvi_2264 0.84 +0.0
2,683,347 + Echvi_2264 0.84 -0.7
2,683,347 + Echvi_2264 0.84 -3.4
2,683,348 - Echvi_2264 0.84 -0.8
2,683,348 - Echvi_2264 0.84 -1.5
2,683,348 - Echvi_2264 0.84 +0.6
2,683,348 - Echvi_2264 0.84 -2.7
2,683,458 - +0.0
2,683,489 + +0.0
2,683,507 + -1.0
2,683,507 + +0.1
2,683,574 + -0.9
2,683,586 + -0.9
2,684,037 - +1.4
2,684,054 + +0.2
2,684,054 + +0.2
2,684,055 - +1.9
2,684,071 - +0.9
2,684,189 - Echvi_2266 0.13 +1.0
2,684,198 + Echvi_2266 0.14 +1.3
2,684,199 - Echvi_2266 0.14 -0.1
2,684,202 - Echvi_2266 0.14 +0.2
2,684,262 + Echvi_2266 0.19 +0.3
2,684,263 - Echvi_2266 0.19 +0.8
2,684,285 - Echvi_2266 0.21 +0.9
2,684,285 - Echvi_2266 0.21 +0.4
2,684,289 + Echvi_2266 0.21 -0.3
2,684,290 - Echvi_2266 0.22 +1.0
2,684,290 - Echvi_2266 0.22 +0.4
2,684,364 - Echvi_2266 0.28 +1.6
2,684,364 - Echvi_2266 0.28 -0.4
2,684,421 + Echvi_2266 0.32 +1.0
2,684,421 + Echvi_2266 0.32 +0.4
2,684,421 + Echvi_2266 0.32 +0.3
2,684,422 - Echvi_2266 0.32 -0.4
2,684,422 - Echvi_2266 0.32 +0.8
2,684,423 + Echvi_2266 0.32 +0.3
2,684,423 + Echvi_2266 0.32 +0.6
2,684,424 - Echvi_2266 0.33 +0.7
2,684,481 - Echvi_2266 0.37 +1.4
2,684,485 + Echvi_2266 0.38 +0.2
2,684,486 - Echvi_2266 0.38 -0.6
2,684,521 + Echvi_2266 0.40 +2.8
2,684,521 + Echvi_2266 0.40 +0.3
2,684,528 + Echvi_2266 0.41 -0.2
2,684,528 + Echvi_2266 0.41 +0.9
2,684,528 + Echvi_2266 0.41 +0.2

Or see this region's nucleotide sequence