Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2258

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2256 and Echvi_2257 are separated by 12 nucleotidesEchvi_2257 and Echvi_2258 are separated by 8 nucleotidesEchvi_2258 and Echvi_2259 are separated by 58 nucleotidesEchvi_2259 and Echvi_2260 are separated by 3 nucleotides Echvi_2256: Echvi_2256 - Mismatch repair ATPase (MutS family), at 2,673,467 to 2,675,857 _2256 Echvi_2257: Echvi_2257 - hypothetical protein, at 2,675,870 to 2,676,304 _2257 Echvi_2258: Echvi_2258 - hypothetical protein, at 2,676,313 to 2,676,789 _2258 Echvi_2259: Echvi_2259 - ABC-type multidrug transport system, ATPase component, at 2,676,848 to 2,677,483 _2259 Echvi_2260: Echvi_2260 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, at 2,677,487 to 2,678,266 _2260 Position (kb) 2676 2677Strain fitness (log2 ratio) -2 -1 0 1 2at 2675.410 kb on - strand, within Echvi_2256at 2675.418 kb on - strand, within Echvi_2256at 2675.421 kb on + strand, within Echvi_2256at 2675.478 kb on + strand, within Echvi_2256at 2675.478 kb on + strand, within Echvi_2256at 2675.479 kb on - strand, within Echvi_2256at 2675.479 kb on - strand, within Echvi_2256at 2675.511 kb on + strand, within Echvi_2256at 2675.511 kb on + strand, within Echvi_2256at 2675.512 kb on - strand, within Echvi_2256at 2675.512 kb on - strand, within Echvi_2256at 2675.588 kb on + strand, within Echvi_2256at 2675.588 kb on + strand, within Echvi_2256at 2675.594 kb on - strand, within Echvi_2256at 2675.623 kb on + strandat 2675.634 kb on + strandat 2675.635 kb on - strandat 2675.884 kb on + strandat 2675.885 kb on - strandat 2675.886 kb on + strandat 2675.887 kb on - strandat 2676.033 kb on + strand, within Echvi_2257at 2676.034 kb on - strand, within Echvi_2257at 2676.047 kb on + strand, within Echvi_2257at 2676.312 kb on - strandat 2676.330 kb on + strandat 2676.334 kb on + strandat 2676.334 kb on + strandat 2676.334 kb on + strandat 2676.334 kb on + strandat 2676.335 kb on - strandat 2676.373 kb on - strand, within Echvi_2258at 2676.388 kb on - strand, within Echvi_2258at 2676.643 kb on + strand, within Echvi_2258at 2676.768 kb on + strandat 2676.772 kb on - strandat 2676.772 kb on - strandat 2676.772 kb on - strandat 2676.779 kb on - strandat 2676.779 kb on - strandat 2676.789 kb on + strandat 2676.789 kb on + strandat 2676.790 kb on - strandat 2676.790 kb on - strandat 2676.790 kb on - strandat 2676.791 kb on + strandat 2676.792 kb on - strandat 2676.792 kb on - strandat 2676.824 kb on - strandat 2676.828 kb on - strandat 2676.839 kb on + strandat 2677.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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2,675,410 - Echvi_2256 0.81 -0.2
2,675,418 - Echvi_2256 0.82 -0.7
2,675,421 + Echvi_2256 0.82 +0.4
2,675,478 + Echvi_2256 0.84 +1.6
2,675,478 + Echvi_2256 0.84 +0.6
2,675,479 - Echvi_2256 0.84 -0.0
2,675,479 - Echvi_2256 0.84 -0.6
2,675,511 + Echvi_2256 0.85 -1.8
2,675,511 + Echvi_2256 0.85 +1.4
2,675,512 - Echvi_2256 0.86 -0.8
2,675,512 - Echvi_2256 0.86 +1.4
2,675,588 + Echvi_2256 0.89 +0.4
2,675,588 + Echvi_2256 0.89 -0.8
2,675,594 - Echvi_2256 0.89 +1.4
2,675,623 + +1.5
2,675,634 + +1.2
2,675,635 - +0.0
2,675,884 + -0.4
2,675,885 - +0.7
2,675,886 + -0.3
2,675,887 - -0.3
2,676,033 + Echvi_2257 0.37 +0.0
2,676,034 - Echvi_2257 0.38 -1.0
2,676,047 + Echvi_2257 0.41 +0.3
2,676,312 - -0.8
2,676,330 + +2.2
2,676,334 + +0.9
2,676,334 + +1.1
2,676,334 + -0.3
2,676,334 + -0.3
2,676,335 - -0.5
2,676,373 - Echvi_2258 0.13 -0.1
2,676,388 - Echvi_2258 0.16 -1.5
2,676,643 + Echvi_2258 0.69 -0.0
2,676,768 + +0.8
2,676,772 - +0.3
2,676,772 - -0.5
2,676,772 - -0.2
2,676,779 - -0.4
2,676,779 - +0.0
2,676,789 + +1.5
2,676,789 + +0.8
2,676,790 - -2.0
2,676,790 - -2.2
2,676,790 - -0.5
2,676,791 + -0.3
2,676,792 - -2.1
2,676,792 - +0.0
2,676,824 - +1.7
2,676,828 - +2.4
2,676,839 + -0.5
2,677,498 - +0.8

Or see this region's nucleotide sequence