Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1835

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1834 and Echvi_1835 are separated by 164 nucleotidesEchvi_1835 and Echvi_1836 are separated by 54 nucleotidesEchvi_1836 and Echvi_1837 are separated by 103 nucleotides Echvi_1834: Echvi_1834 - ribosome small subunit-dependent GTPase A, at 2,150,355 to 2,151,284 _1834 Echvi_1835: Echvi_1835 - Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 2,151,449 to 2,151,952 _1835 Echvi_1836: Echvi_1836 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 2,152,007 to 2,152,828 _1836 Echvi_1837: Echvi_1837 - hypothetical protein, at 2,152,932 to 2,154,020 _1837 Position (kb) 2151 2152Strain fitness (log2 ratio) -3 -2 -1 0 1at 2151.342 kb on - strandat 2151.342 kb on - strandat 2151.370 kb on - strandat 2151.440 kb on + strandat 2151.441 kb on - strandat 2151.459 kb on + strandat 2151.515 kb on + strand, within Echvi_1835at 2151.555 kb on + strand, within Echvi_1835at 2151.555 kb on + strand, within Echvi_1835at 2151.556 kb on - strand, within Echvi_1835at 2151.556 kb on - strand, within Echvi_1835at 2151.574 kb on + strand, within Echvi_1835at 2151.622 kb on - strand, within Echvi_1835at 2151.636 kb on + strand, within Echvi_1835at 2151.637 kb on - strand, within Echvi_1835at 2151.661 kb on + strand, within Echvi_1835at 2151.693 kb on + strand, within Echvi_1835at 2151.766 kb on + strand, within Echvi_1835at 2151.770 kb on + strand, within Echvi_1835at 2151.794 kb on + strand, within Echvi_1835at 2151.866 kb on + strand, within Echvi_1835at 2151.866 kb on + strand, within Echvi_1835at 2151.866 kb on + strand, within Echvi_1835at 2151.868 kb on + strand, within Echvi_1835at 2151.889 kb on + strand, within Echvi_1835at 2151.890 kb on - strand, within Echvi_1835at 2151.894 kb on + strand, within Echvi_1835at 2151.895 kb on - strand, within Echvi_1835at 2151.941 kb on + strandat 2151.954 kb on + strandat 2151.970 kb on + strandat 2152.003 kb on + strandat 2152.003 kb on + strandat 2152.841 kb on + strandat 2152.852 kb on + strandat 2152.856 kb on + strandat 2152.856 kb on + strandat 2152.856 kb on + strandat 2152.857 kb on - strandat 2152.880 kb on + strandat 2152.881 kb on - strandat 2152.881 kb on - strandat 2152.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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2,151,342 - +0.1
2,151,342 - -0.1
2,151,370 - -0.3
2,151,440 + +0.2
2,151,441 - +0.7
2,151,459 + +0.7
2,151,515 + Echvi_1835 0.13 -0.4
2,151,555 + Echvi_1835 0.21 +0.1
2,151,555 + Echvi_1835 0.21 +0.7
2,151,556 - Echvi_1835 0.21 -1.1
2,151,556 - Echvi_1835 0.21 -0.8
2,151,574 + Echvi_1835 0.25 -0.1
2,151,622 - Echvi_1835 0.34 -0.5
2,151,636 + Echvi_1835 0.37 -0.1
2,151,637 - Echvi_1835 0.37 -1.3
2,151,661 + Echvi_1835 0.42 -1.1
2,151,693 + Echvi_1835 0.48 -1.2
2,151,766 + Echvi_1835 0.63 -2.9
2,151,770 + Echvi_1835 0.64 -0.4
2,151,794 + Echvi_1835 0.68 +1.5
2,151,866 + Echvi_1835 0.83 -0.1
2,151,866 + Echvi_1835 0.83 -1.2
2,151,866 + Echvi_1835 0.83 -1.5
2,151,868 + Echvi_1835 0.83 +0.0
2,151,889 + Echvi_1835 0.87 +0.5
2,151,890 - Echvi_1835 0.88 -0.5
2,151,894 + Echvi_1835 0.88 -0.2
2,151,895 - Echvi_1835 0.88 +0.1
2,151,941 + +1.3
2,151,954 + +1.1
2,151,970 + +0.7
2,152,003 + +0.2
2,152,003 + +0.9
2,152,841 + -0.2
2,152,852 + +1.2
2,152,856 + -0.1
2,152,856 + +0.2
2,152,856 + +0.8
2,152,857 - -0.4
2,152,880 + -0.3
2,152,881 - +0.2
2,152,881 - +0.0
2,152,934 - +0.6

Or see this region's nucleotide sequence