Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1671

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1670 and Echvi_1671 overlap by 14 nucleotidesEchvi_1671 and Echvi_1672 are separated by 192 nucleotides Echvi_1670: Echvi_1670 - hypothetical protein, at 1,948,377 to 1,949,018 _1670 Echvi_1671: Echvi_1671 - AraC-type DNA-binding domain-containing proteins, at 1,949,005 to 1,949,952 _1671 Echvi_1672: Echvi_1672 - TonB-linked outer membrane protein, SusC/RagA family, at 1,950,145 to 1,953,195 _1672 Position (kb) 1949 1950Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1948.038 kb on + strandat 1948.038 kb on + strandat 1948.039 kb on - strandat 1948.092 kb on + strandat 1948.099 kb on + strandat 1948.099 kb on + strandat 1948.099 kb on + strandat 1948.100 kb on - strandat 1948.106 kb on + strandat 1948.137 kb on - strandat 1948.137 kb on - strandat 1948.137 kb on - strandat 1948.195 kb on + strandat 1948.290 kb on + strandat 1948.324 kb on - strandat 1948.324 kb on - strandat 1948.324 kb on - strandat 1948.362 kb on + strandat 1948.363 kb on - strandat 1948.378 kb on + strandat 1948.382 kb on + strandat 1948.439 kb on + strandat 1948.439 kb on + strandat 1948.440 kb on - strandat 1948.440 kb on - strandat 1948.506 kb on + strand, within Echvi_1670at 1948.506 kb on + strand, within Echvi_1670at 1948.506 kb on + strand, within Echvi_1670at 1948.519 kb on + strand, within Echvi_1670at 1948.519 kb on + strand, within Echvi_1670at 1948.519 kb on + strand, within Echvi_1670at 1948.519 kb on + strand, within Echvi_1670at 1948.519 kb on + strand, within Echvi_1670at 1948.519 kb on + strand, within Echvi_1670at 1948.520 kb on - strand, within Echvi_1670at 1948.520 kb on - strand, within Echvi_1670at 1948.520 kb on - strand, within Echvi_1670at 1948.520 kb on - strand, within Echvi_1670at 1948.524 kb on + strand, within Echvi_1670at 1948.525 kb on - strand, within Echvi_1670at 1948.551 kb on + strand, within Echvi_1670at 1948.551 kb on + strand, within Echvi_1670at 1948.556 kb on + strand, within Echvi_1670at 1948.583 kb on + strand, within Echvi_1670at 1948.583 kb on + strand, within Echvi_1670at 1948.595 kb on + strand, within Echvi_1670at 1948.655 kb on + strand, within Echvi_1670at 1948.691 kb on + strand, within Echvi_1670at 1948.691 kb on + strand, within Echvi_1670at 1948.702 kb on - strand, within Echvi_1670at 1948.722 kb on + strand, within Echvi_1670at 1948.723 kb on - strand, within Echvi_1670at 1948.723 kb on - strand, within Echvi_1670at 1948.777 kb on + strand, within Echvi_1670at 1948.777 kb on + strand, within Echvi_1670at 1948.777 kb on + strand, within Echvi_1670at 1948.777 kb on + strand, within Echvi_1670at 1948.777 kb on + strand, within Echvi_1670at 1948.777 kb on + strand, within Echvi_1670at 1948.778 kb on - strand, within Echvi_1670at 1948.778 kb on - strand, within Echvi_1670at 1948.778 kb on - strand, within Echvi_1670at 1948.778 kb on - strand, within Echvi_1670at 1948.795 kb on - strand, within Echvi_1670at 1948.798 kb on - strand, within Echvi_1670at 1948.830 kb on - strand, within Echvi_1670at 1948.839 kb on + strand, within Echvi_1670at 1948.839 kb on + strand, within Echvi_1670at 1948.840 kb on - strand, within Echvi_1670at 1948.840 kb on - strand, within Echvi_1670at 1948.877 kb on + strand, within Echvi_1670at 1948.878 kb on - strand, within Echvi_1670at 1948.878 kb on - strand, within Echvi_1670at 1948.879 kb on + strand, within Echvi_1670at 1948.879 kb on + strand, within Echvi_1670at 1948.880 kb on - strand, within Echvi_1670at 1948.880 kb on - strand, within Echvi_1670at 1948.880 kb on - strand, within Echvi_1670at 1948.887 kb on - strand, within Echvi_1670at 1948.986 kb on - strandat 1949.076 kb on + strandat 1949.076 kb on + strandat 1949.092 kb on + strandat 1949.092 kb on + strandat 1949.093 kb on - strandat 1949.190 kb on + strand, within Echvi_1671at 1949.247 kb on + strand, within Echvi_1671at 1949.313 kb on + strand, within Echvi_1671at 1949.313 kb on + strand, within Echvi_1671at 1949.313 kb on + strand, within Echvi_1671at 1949.395 kb on + strand, within Echvi_1671at 1949.474 kb on + strand, within Echvi_1671at 1949.560 kb on + strand, within Echvi_1671at 1949.560 kb on + strand, within Echvi_1671at 1949.617 kb on - strand, within Echvi_1671at 1949.696 kb on - strand, within Echvi_1671at 1949.745 kb on - strand, within Echvi_1671at 1949.821 kb on - strand, within Echvi_1671at 1949.851 kb on - strand, within Echvi_1671at 1949.932 kb on - strandat 1949.932 kb on - strandat 1950.006 kb on + strandat 1950.012 kb on - strandat 1950.085 kb on - strandat 1950.088 kb on + strandat 1950.088 kb on + strandat 1950.089 kb on - strandat 1950.089 kb on - strandat 1950.089 kb on - strandat 1950.109 kb on + strandat 1950.121 kb on + strandat 1950.144 kb on + strandat 1950.144 kb on + strandat 1950.145 kb on - strandat 1950.158 kb on + strandat 1950.158 kb on + strandat 1950.180 kb on - strandat 1950.200 kb on + strandat 1950.200 kb on + strandat 1950.206 kb on + strandat 1950.207 kb on - strandat 1950.420 kb on + strandat 1950.593 kb on + strand, within Echvi_1672at 1950.594 kb on - strandat 1950.626 kb on + strand, within Echvi_1672at 1950.626 kb on + strand, within Echvi_1672at 1950.626 kb on + strand, within Echvi_1672at 1950.627 kb on - strand, within Echvi_1672at 1950.627 kb on - strand, within Echvi_1672at 1950.736 kb on - strand, within Echvi_1672at 1950.789 kb on + strand, within Echvi_1672at 1950.792 kb on + strand, within Echvi_1672at 1950.850 kb on + strand, within Echvi_1672at 1950.851 kb on - strand, within Echvi_1672

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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1,948,038 + -0.5
1,948,038 + +0.8
1,948,039 - -0.1
1,948,092 + +0.7
1,948,099 + -0.7
1,948,099 + +0.7
1,948,099 + -1.1
1,948,100 - -1.0
1,948,106 + +0.3
1,948,137 - +0.7
1,948,137 - -0.4
1,948,137 - +1.9
1,948,195 + +1.0
1,948,290 + +1.3
1,948,324 - -0.1
1,948,324 - -0.6
1,948,324 - -0.4
1,948,362 + -0.1
1,948,363 - -0.3
1,948,378 + -1.3
1,948,382 + +0.1
1,948,439 + +0.1
1,948,439 + -0.6
1,948,440 - -0.4
1,948,440 - -0.3
1,948,506 + Echvi_1670 0.20 +0.2
1,948,506 + Echvi_1670 0.20 -0.3
1,948,506 + Echvi_1670 0.20 +1.1
1,948,519 + Echvi_1670 0.22 -0.4
1,948,519 + Echvi_1670 0.22 +0.4
1,948,519 + Echvi_1670 0.22 -0.8
1,948,519 + Echvi_1670 0.22 -0.1
1,948,519 + Echvi_1670 0.22 +1.5
1,948,519 + Echvi_1670 0.22 -0.2
1,948,520 - Echvi_1670 0.22 -0.8
1,948,520 - Echvi_1670 0.22 +0.1
1,948,520 - Echvi_1670 0.22 -0.1
1,948,520 - Echvi_1670 0.22 -0.8
1,948,524 + Echvi_1670 0.23 -1.3
1,948,525 - Echvi_1670 0.23 -0.6
1,948,551 + Echvi_1670 0.27 +0.0
1,948,551 + Echvi_1670 0.27 +0.4
1,948,556 + Echvi_1670 0.28 -0.9
1,948,583 + Echvi_1670 0.32 -0.2
1,948,583 + Echvi_1670 0.32 -0.9
1,948,595 + Echvi_1670 0.34 +0.2
1,948,655 + Echvi_1670 0.43 -0.1
1,948,691 + Echvi_1670 0.49 -0.6
1,948,691 + Echvi_1670 0.49 -1.5
1,948,702 - Echvi_1670 0.51 -0.6
1,948,722 + Echvi_1670 0.54 -1.6
1,948,723 - Echvi_1670 0.54 -0.7
1,948,723 - Echvi_1670 0.54 -0.1
1,948,777 + Echvi_1670 0.62 -0.7
1,948,777 + Echvi_1670 0.62 -0.5
1,948,777 + Echvi_1670 0.62 -0.5
1,948,777 + Echvi_1670 0.62 -0.8
1,948,777 + Echvi_1670 0.62 +0.4
1,948,777 + Echvi_1670 0.62 -0.0
1,948,778 - Echvi_1670 0.62 -0.5
1,948,778 - Echvi_1670 0.62 -1.1
1,948,778 - Echvi_1670 0.62 -0.1
1,948,778 - Echvi_1670 0.62 -0.2
1,948,795 - Echvi_1670 0.65 -0.4
1,948,798 - Echvi_1670 0.66 -1.2
1,948,830 - Echvi_1670 0.71 +0.3
1,948,839 + Echvi_1670 0.72 +0.2
1,948,839 + Echvi_1670 0.72 -0.3
1,948,840 - Echvi_1670 0.72 +0.7
1,948,840 - Echvi_1670 0.72 +0.5
1,948,877 + Echvi_1670 0.78 -0.6
1,948,878 - Echvi_1670 0.78 +0.7
1,948,878 - Echvi_1670 0.78 +0.0
1,948,879 + Echvi_1670 0.78 +0.4
1,948,879 + Echvi_1670 0.78 +0.1
1,948,880 - Echvi_1670 0.78 +1.0
1,948,880 - Echvi_1670 0.78 -0.1
1,948,880 - Echvi_1670 0.78 +0.7
1,948,887 - Echvi_1670 0.79 -0.2
1,948,986 - -0.0
1,949,076 + +0.8
1,949,076 + -0.2
1,949,092 + -0.4
1,949,092 + -0.6
1,949,093 - -1.1
1,949,190 + Echvi_1671 0.20 -1.3
1,949,247 + Echvi_1671 0.26 -0.1
1,949,313 + Echvi_1671 0.32 -1.9
1,949,313 + Echvi_1671 0.32 -0.8
1,949,313 + Echvi_1671 0.32 -1.9
1,949,395 + Echvi_1671 0.41 -0.2
1,949,474 + Echvi_1671 0.49 -0.2
1,949,560 + Echvi_1671 0.59 +0.5
1,949,560 + Echvi_1671 0.59 -3.1
1,949,617 - Echvi_1671 0.65 -0.2
1,949,696 - Echvi_1671 0.73 -0.7
1,949,745 - Echvi_1671 0.78 +0.1
1,949,821 - Echvi_1671 0.86 -0.1
1,949,851 - Echvi_1671 0.89 -2.1
1,949,932 - +0.7
1,949,932 - -0.0
1,950,006 + +0.4
1,950,012 - -0.7
1,950,085 - -0.5
1,950,088 + -0.6
1,950,088 + -0.0
1,950,089 - +0.1
1,950,089 - +0.2
1,950,089 - +0.4
1,950,109 + -1.1
1,950,121 + -1.7
1,950,144 + +0.3
1,950,144 + -0.4
1,950,145 - +1.6
1,950,158 + -0.1
1,950,158 + +0.4
1,950,180 - -0.0
1,950,200 + -0.8
1,950,200 + -0.1
1,950,206 + -0.3
1,950,207 - -0.1
1,950,420 + -1.9
1,950,593 + Echvi_1672 0.15 -0.0
1,950,594 - -0.1
1,950,626 + Echvi_1672 0.16 -0.6
1,950,626 + Echvi_1672 0.16 -0.1
1,950,626 + Echvi_1672 0.16 +1.9
1,950,627 - Echvi_1672 0.16 -1.4
1,950,627 - Echvi_1672 0.16 +0.9
1,950,736 - Echvi_1672 0.19 +0.5
1,950,789 + Echvi_1672 0.21 -0.1
1,950,792 + Echvi_1672 0.21 -0.2
1,950,850 + Echvi_1672 0.23 -1.2
1,950,851 - Echvi_1672 0.23 -1.0

Or see this region's nucleotide sequence