Experiment: m.b. perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1359 and Echvi_1360 overlap by 14 nucleotides Echvi_1360 and Echvi_1361 overlap by 11 nucleotides Echvi_1361 and Echvi_1362 are separated by 3 nucleotides
Echvi_1359: Echvi_1359 - hypothetical protein, at 1,565,446 to 1,566,084
_1359
Echvi_1360: Echvi_1360 - hypothetical protein, at 1,566,071 to 1,566,718
_1360
Echvi_1361: Echvi_1361 - hypothetical protein, at 1,566,708 to 1,567,394
_1361
Echvi_1362: Echvi_1362 - Bacteroides conjugation system ATPase, TraG family, at 1,567,398 to 1,569,860
_1362
Position (kb)
1566
1567
1568 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1565.760 kb on - strand, within Echvi_1359 at 1565.773 kb on - strand, within Echvi_1359 at 1565.773 kb on - strand, within Echvi_1359 at 1565.808 kb on - strand, within Echvi_1359 at 1565.870 kb on + strand, within Echvi_1359 at 1565.870 kb on + strand, within Echvi_1359 at 1565.871 kb on - strand, within Echvi_1359 at 1565.871 kb on - strand, within Echvi_1359 at 1565.871 kb on - strand, within Echvi_1359 at 1565.904 kb on - strand, within Echvi_1359 at 1565.933 kb on + strand, within Echvi_1359 at 1565.933 kb on + strand, within Echvi_1359 at 1565.934 kb on - strand, within Echvi_1359 at 1565.934 kb on - strand, within Echvi_1359 at 1566.087 kb on + strand at 1566.088 kb on - strand at 1566.099 kb on - strand at 1566.099 kb on - strand at 1566.161 kb on - strand, within Echvi_1360 at 1566.180 kb on + strand, within Echvi_1360 at 1566.199 kb on + strand, within Echvi_1360 at 1566.205 kb on + strand, within Echvi_1360 at 1566.205 kb on + strand, within Echvi_1360 at 1566.205 kb on + strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.265 kb on + strand, within Echvi_1360 at 1566.394 kb on - strand, within Echvi_1360 at 1566.394 kb on - strand, within Echvi_1360 at 1566.400 kb on + strand, within Echvi_1360 at 1566.400 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.575 kb on - strand, within Echvi_1360 at 1566.575 kb on - strand, within Echvi_1360 at 1566.576 kb on + strand, within Echvi_1360 at 1566.577 kb on - strand, within Echvi_1360 at 1566.602 kb on + strand, within Echvi_1360 at 1566.603 kb on - strand, within Echvi_1360 at 1566.603 kb on - strand, within Echvi_1360 at 1566.609 kb on + strand, within Echvi_1360 at 1566.661 kb on - strand at 1566.689 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.703 kb on - strand at 1566.703 kb on - strand at 1566.703 kb on - strand at 1566.718 kb on + strand at 1566.888 kb on + strand, within Echvi_1361 at 1566.888 kb on + strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.941 kb on - strand, within Echvi_1361 at 1567.087 kb on - strand, within Echvi_1361 at 1567.087 kb on - strand, within Echvi_1361 at 1567.117 kb on + strand, within Echvi_1361 at 1567.118 kb on - strand, within Echvi_1361 at 1567.378 kb on + strand at 1567.379 kb on - strand at 1567.379 kb on - strand at 1567.379 kb on - strand at 1567.379 kb on - strand at 1567.394 kb on + strand at 1567.394 kb on + strand at 1567.395 kb on - strand at 1567.399 kb on + strand at 1567.400 kb on - strand at 1567.400 kb on - strand at 1567.496 kb on + strand at 1567.498 kb on + strand at 1567.498 kb on + strand at 1567.499 kb on - strand at 1567.508 kb on - strand at 1567.681 kb on + strand, within Echvi_1362 at 1567.681 kb on + strand, within Echvi_1362 at 1567.682 kb on - strand, within Echvi_1362 at 1567.814 kb on + strand, within Echvi_1362 at 1567.822 kb on + strand, within Echvi_1362 at 1567.822 kb on + strand, within Echvi_1362 at 1567.937 kb on + strand, within Echvi_1362 at 1567.937 kb on + strand, within Echvi_1362 at 1568.014 kb on - strand, within Echvi_1362 at 1568.068 kb on + strand, within Echvi_1362 at 1568.069 kb on - strand, within Echvi_1362 at 1568.071 kb on + strand, within Echvi_1362 at 1568.079 kb on + strand, within Echvi_1362 at 1568.082 kb on + strand, within Echvi_1362 at 1568.082 kb on + strand, within Echvi_1362 at 1568.082 kb on + strand, within Echvi_1362 at 1568.083 kb on - strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.087 kb on - strand, within Echvi_1362 at 1568.165 kb on - strand, within Echvi_1362 at 1568.171 kb on - strand, within Echvi_1362 at 1568.181 kb on - strand, within Echvi_1362 at 1568.221 kb on + strand, within Echvi_1362 at 1568.221 kb on + strand, within Echvi_1362 at 1568.224 kb on + strand, within Echvi_1362 at 1568.250 kb on + strand, within Echvi_1362 at 1568.250 kb on + strand, within Echvi_1362 at 1568.250 kb on + strand, within Echvi_1362 at 1568.251 kb on - strand, within Echvi_1362 at 1568.251 kb on - strand, within Echvi_1362 at 1568.254 kb on + strand, within Echvi_1362
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM remove 1,565,760 - Echvi_1359 0.49 -0.3 1,565,773 - Echvi_1359 0.51 +0.0 1,565,773 - Echvi_1359 0.51 -0.5 1,565,808 - Echvi_1359 0.57 -2.3 1,565,870 + Echvi_1359 0.66 -0.0 1,565,870 + Echvi_1359 0.66 +0.1 1,565,871 - Echvi_1359 0.67 -0.4 1,565,871 - Echvi_1359 0.67 -0.8 1,565,871 - Echvi_1359 0.67 +1.3 1,565,904 - Echvi_1359 0.72 +2.0 1,565,933 + Echvi_1359 0.76 -0.0 1,565,933 + Echvi_1359 0.76 -1.1 1,565,934 - Echvi_1359 0.76 -0.2 1,565,934 - Echvi_1359 0.76 +0.9 1,566,087 + -0.4 1,566,088 - +0.6 1,566,099 - -0.2 1,566,099 - -0.0 1,566,161 - Echvi_1360 0.14 -0.1 1,566,180 + Echvi_1360 0.17 +0.1 1,566,199 + Echvi_1360 0.20 +0.3 1,566,205 + Echvi_1360 0.21 -1.4 1,566,205 + Echvi_1360 0.21 -1.2 1,566,205 + Echvi_1360 0.21 -0.9 1,566,206 - Echvi_1360 0.21 +0.4 1,566,206 - Echvi_1360 0.21 +2.7 1,566,206 - Echvi_1360 0.21 +0.5 1,566,206 - Echvi_1360 0.21 -0.6 1,566,265 + Echvi_1360 0.30 +0.2 1,566,394 - Echvi_1360 0.50 +0.3 1,566,394 - Echvi_1360 0.50 +1.3 1,566,400 + Echvi_1360 0.51 +0.8 1,566,400 + Echvi_1360 0.51 +0.3 1,566,402 + Echvi_1360 0.51 -0.5 1,566,402 + Echvi_1360 0.51 -0.4 1,566,402 + Echvi_1360 0.51 +0.1 1,566,402 + Echvi_1360 0.51 +0.5 1,566,402 + Echvi_1360 0.51 -0.7 1,566,402 + Echvi_1360 0.51 +0.7 1,566,402 + Echvi_1360 0.51 +0.6 1,566,403 - Echvi_1360 0.51 -0.7 1,566,403 - Echvi_1360 0.51 -1.1 1,566,403 - Echvi_1360 0.51 +0.2 1,566,403 - Echvi_1360 0.51 -1.5 1,566,403 - Echvi_1360 0.51 +2.4 1,566,403 - Echvi_1360 0.51 -0.5 1,566,403 - Echvi_1360 0.51 +3.0 1,566,403 - Echvi_1360 0.51 -1.7 1,566,403 - Echvi_1360 0.51 -1.0 1,566,575 - Echvi_1360 0.78 +1.7 1,566,575 - Echvi_1360 0.78 +0.3 1,566,576 + Echvi_1360 0.78 +0.6 1,566,577 - Echvi_1360 0.78 +0.1 1,566,602 + Echvi_1360 0.82 -1.6 1,566,603 - Echvi_1360 0.82 +2.7 1,566,603 - Echvi_1360 0.82 +1.1 1,566,609 + Echvi_1360 0.83 +0.6 1,566,661 - +0.2 1,566,689 + -0.5 1,566,702 + +0.2 1,566,702 + -0.9 1,566,702 + +1.8 1,566,702 + -0.4 1,566,702 + +0.3 1,566,702 + +0.1 1,566,702 + +0.9 1,566,703 - +0.7 1,566,703 - -0.1 1,566,703 - -0.2 1,566,718 + -0.2 1,566,888 + Echvi_1361 0.26 -2.9 1,566,888 + Echvi_1361 0.26 +1.0 1,566,889 - Echvi_1361 0.26 -0.6 1,566,889 - Echvi_1361 0.26 -1.0 1,566,889 - Echvi_1361 0.26 -1.4 1,566,889 - Echvi_1361 0.26 -0.4 1,566,941 - Echvi_1361 0.34 -0.8 1,567,087 - Echvi_1361 0.55 -1.0 1,567,087 - Echvi_1361 0.55 -0.8 1,567,117 + Echvi_1361 0.60 -2.2 1,567,118 - Echvi_1361 0.60 -0.6 1,567,378 + +0.8 1,567,379 - +1.3 1,567,379 - -0.0 1,567,379 - -2.6 1,567,379 - -1.2 1,567,394 + -0.7 1,567,394 + +0.1 1,567,395 - -0.1 1,567,399 + +0.1 1,567,400 - +0.1 1,567,400 - -1.2 1,567,496 + -0.4 1,567,498 + -1.6 1,567,498 + -0.3 1,567,499 - -0.6 1,567,508 - +0.1 1,567,681 + Echvi_1362 0.11 -0.1 1,567,681 + Echvi_1362 0.11 +0.4 1,567,682 - Echvi_1362 0.12 +1.0 1,567,814 + Echvi_1362 0.17 +1.6 1,567,822 + Echvi_1362 0.17 -1.2 1,567,822 + Echvi_1362 0.17 +0.6 1,567,937 + Echvi_1362 0.22 -1.7 1,567,937 + Echvi_1362 0.22 -1.8 1,568,014 - Echvi_1362 0.25 -0.8 1,568,068 + Echvi_1362 0.27 +0.0 1,568,069 - Echvi_1362 0.27 +0.4 1,568,071 + Echvi_1362 0.27 -0.4 1,568,079 + Echvi_1362 0.28 -0.4 1,568,082 + Echvi_1362 0.28 -0.2 1,568,082 + Echvi_1362 0.28 +0.4 1,568,082 + Echvi_1362 0.28 +0.9 1,568,083 - Echvi_1362 0.28 +0.1 1,568,086 + Echvi_1362 0.28 -0.5 1,568,086 + Echvi_1362 0.28 +0.1 1,568,086 + Echvi_1362 0.28 -0.1 1,568,086 + Echvi_1362 0.28 +0.2 1,568,087 - Echvi_1362 0.28 +0.8 1,568,165 - Echvi_1362 0.31 +2.6 1,568,171 - Echvi_1362 0.31 -0.8 1,568,181 - Echvi_1362 0.32 -1.5 1,568,221 + Echvi_1362 0.33 -0.9 1,568,221 + Echvi_1362 0.33 -0.5 1,568,224 + Echvi_1362 0.34 +0.3 1,568,250 + Echvi_1362 0.35 -1.6 1,568,250 + Echvi_1362 0.35 -1.4 1,568,250 + Echvi_1362 0.35 -0.6 1,568,251 - Echvi_1362 0.35 -1.6 1,568,251 - Echvi_1362 0.35 -1.5 1,568,254 + Echvi_1362 0.35 -0.2
Or see this region's nucleotide sequence