Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1361

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1359 and Echvi_1360 overlap by 14 nucleotidesEchvi_1360 and Echvi_1361 overlap by 11 nucleotidesEchvi_1361 and Echvi_1362 are separated by 3 nucleotides Echvi_1359: Echvi_1359 - hypothetical protein, at 1,565,446 to 1,566,084 _1359 Echvi_1360: Echvi_1360 - hypothetical protein, at 1,566,071 to 1,566,718 _1360 Echvi_1361: Echvi_1361 - hypothetical protein, at 1,566,708 to 1,567,394 _1361 Echvi_1362: Echvi_1362 - Bacteroides conjugation system ATPase, TraG family, at 1,567,398 to 1,569,860 _1362 Position (kb) 1566 1567 1568Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1565.760 kb on - strand, within Echvi_1359at 1565.773 kb on - strand, within Echvi_1359at 1565.773 kb on - strand, within Echvi_1359at 1565.808 kb on - strand, within Echvi_1359at 1565.870 kb on + strand, within Echvi_1359at 1565.870 kb on + strand, within Echvi_1359at 1565.871 kb on - strand, within Echvi_1359at 1565.871 kb on - strand, within Echvi_1359at 1565.871 kb on - strand, within Echvi_1359at 1565.904 kb on - strand, within Echvi_1359at 1565.933 kb on + strand, within Echvi_1359at 1565.933 kb on + strand, within Echvi_1359at 1565.934 kb on - strand, within Echvi_1359at 1565.934 kb on - strand, within Echvi_1359at 1566.087 kb on + strandat 1566.088 kb on - strandat 1566.099 kb on - strandat 1566.099 kb on - strandat 1566.161 kb on - strand, within Echvi_1360at 1566.180 kb on + strand, within Echvi_1360at 1566.199 kb on + strand, within Echvi_1360at 1566.205 kb on + strand, within Echvi_1360at 1566.205 kb on + strand, within Echvi_1360at 1566.205 kb on + strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.265 kb on + strand, within Echvi_1360at 1566.394 kb on - strand, within Echvi_1360at 1566.394 kb on - strand, within Echvi_1360at 1566.400 kb on + strand, within Echvi_1360at 1566.400 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.575 kb on - strand, within Echvi_1360at 1566.575 kb on - strand, within Echvi_1360at 1566.576 kb on + strand, within Echvi_1360at 1566.577 kb on - strand, within Echvi_1360at 1566.602 kb on + strand, within Echvi_1360at 1566.603 kb on - strand, within Echvi_1360at 1566.603 kb on - strand, within Echvi_1360at 1566.609 kb on + strand, within Echvi_1360at 1566.661 kb on - strandat 1566.689 kb on + strandat 1566.702 kb on + strandat 1566.702 kb on + strandat 1566.702 kb on + strandat 1566.702 kb on + strandat 1566.702 kb on + strandat 1566.702 kb on + strandat 1566.702 kb on + strandat 1566.703 kb on - strandat 1566.703 kb on - strandat 1566.703 kb on - strandat 1566.718 kb on + strandat 1566.888 kb on + strand, within Echvi_1361at 1566.888 kb on + strand, within Echvi_1361at 1566.889 kb on - strand, within Echvi_1361at 1566.889 kb on - strand, within Echvi_1361at 1566.889 kb on - strand, within Echvi_1361at 1566.889 kb on - strand, within Echvi_1361at 1566.941 kb on - strand, within Echvi_1361at 1567.087 kb on - strand, within Echvi_1361at 1567.087 kb on - strand, within Echvi_1361at 1567.117 kb on + strand, within Echvi_1361at 1567.118 kb on - strand, within Echvi_1361at 1567.378 kb on + strandat 1567.379 kb on - strandat 1567.379 kb on - strandat 1567.379 kb on - strandat 1567.379 kb on - strandat 1567.394 kb on + strandat 1567.394 kb on + strandat 1567.395 kb on - strandat 1567.399 kb on + strandat 1567.400 kb on - strandat 1567.400 kb on - strandat 1567.496 kb on + strandat 1567.498 kb on + strandat 1567.498 kb on + strandat 1567.499 kb on - strandat 1567.508 kb on - strandat 1567.681 kb on + strand, within Echvi_1362at 1567.681 kb on + strand, within Echvi_1362at 1567.682 kb on - strand, within Echvi_1362at 1567.814 kb on + strand, within Echvi_1362at 1567.822 kb on + strand, within Echvi_1362at 1567.822 kb on + strand, within Echvi_1362at 1567.937 kb on + strand, within Echvi_1362at 1567.937 kb on + strand, within Echvi_1362at 1568.014 kb on - strand, within Echvi_1362at 1568.068 kb on + strand, within Echvi_1362at 1568.069 kb on - strand, within Echvi_1362at 1568.071 kb on + strand, within Echvi_1362at 1568.079 kb on + strand, within Echvi_1362at 1568.082 kb on + strand, within Echvi_1362at 1568.082 kb on + strand, within Echvi_1362at 1568.082 kb on + strand, within Echvi_1362at 1568.083 kb on - strand, within Echvi_1362at 1568.086 kb on + strand, within Echvi_1362at 1568.086 kb on + strand, within Echvi_1362at 1568.086 kb on + strand, within Echvi_1362at 1568.086 kb on + strand, within Echvi_1362at 1568.087 kb on - strand, within Echvi_1362at 1568.165 kb on - strand, within Echvi_1362at 1568.171 kb on - strand, within Echvi_1362at 1568.181 kb on - strand, within Echvi_1362at 1568.221 kb on + strand, within Echvi_1362at 1568.221 kb on + strand, within Echvi_1362at 1568.224 kb on + strand, within Echvi_1362at 1568.250 kb on + strand, within Echvi_1362at 1568.250 kb on + strand, within Echvi_1362at 1568.250 kb on + strand, within Echvi_1362at 1568.251 kb on - strand, within Echvi_1362at 1568.251 kb on - strand, within Echvi_1362at 1568.254 kb on + strand, within Echvi_1362

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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1,565,760 - Echvi_1359 0.49 -0.3
1,565,773 - Echvi_1359 0.51 +0.0
1,565,773 - Echvi_1359 0.51 -0.5
1,565,808 - Echvi_1359 0.57 -2.3
1,565,870 + Echvi_1359 0.66 -0.0
1,565,870 + Echvi_1359 0.66 +0.1
1,565,871 - Echvi_1359 0.67 -0.4
1,565,871 - Echvi_1359 0.67 -0.8
1,565,871 - Echvi_1359 0.67 +1.3
1,565,904 - Echvi_1359 0.72 +2.0
1,565,933 + Echvi_1359 0.76 -0.0
1,565,933 + Echvi_1359 0.76 -1.1
1,565,934 - Echvi_1359 0.76 -0.2
1,565,934 - Echvi_1359 0.76 +0.9
1,566,087 + -0.4
1,566,088 - +0.6
1,566,099 - -0.2
1,566,099 - -0.0
1,566,161 - Echvi_1360 0.14 -0.1
1,566,180 + Echvi_1360 0.17 +0.1
1,566,199 + Echvi_1360 0.20 +0.3
1,566,205 + Echvi_1360 0.21 -1.4
1,566,205 + Echvi_1360 0.21 -1.2
1,566,205 + Echvi_1360 0.21 -0.9
1,566,206 - Echvi_1360 0.21 +0.4
1,566,206 - Echvi_1360 0.21 +2.7
1,566,206 - Echvi_1360 0.21 +0.5
1,566,206 - Echvi_1360 0.21 -0.6
1,566,265 + Echvi_1360 0.30 +0.2
1,566,394 - Echvi_1360 0.50 +0.3
1,566,394 - Echvi_1360 0.50 +1.3
1,566,400 + Echvi_1360 0.51 +0.8
1,566,400 + Echvi_1360 0.51 +0.3
1,566,402 + Echvi_1360 0.51 -0.5
1,566,402 + Echvi_1360 0.51 -0.4
1,566,402 + Echvi_1360 0.51 +0.1
1,566,402 + Echvi_1360 0.51 +0.5
1,566,402 + Echvi_1360 0.51 -0.7
1,566,402 + Echvi_1360 0.51 +0.7
1,566,402 + Echvi_1360 0.51 +0.6
1,566,403 - Echvi_1360 0.51 -0.7
1,566,403 - Echvi_1360 0.51 -1.1
1,566,403 - Echvi_1360 0.51 +0.2
1,566,403 - Echvi_1360 0.51 -1.5
1,566,403 - Echvi_1360 0.51 +2.4
1,566,403 - Echvi_1360 0.51 -0.5
1,566,403 - Echvi_1360 0.51 +3.0
1,566,403 - Echvi_1360 0.51 -1.7
1,566,403 - Echvi_1360 0.51 -1.0
1,566,575 - Echvi_1360 0.78 +1.7
1,566,575 - Echvi_1360 0.78 +0.3
1,566,576 + Echvi_1360 0.78 +0.6
1,566,577 - Echvi_1360 0.78 +0.1
1,566,602 + Echvi_1360 0.82 -1.6
1,566,603 - Echvi_1360 0.82 +2.7
1,566,603 - Echvi_1360 0.82 +1.1
1,566,609 + Echvi_1360 0.83 +0.6
1,566,661 - +0.2
1,566,689 + -0.5
1,566,702 + +0.2
1,566,702 + -0.9
1,566,702 + +1.8
1,566,702 + -0.4
1,566,702 + +0.3
1,566,702 + +0.1
1,566,702 + +0.9
1,566,703 - +0.7
1,566,703 - -0.1
1,566,703 - -0.2
1,566,718 + -0.2
1,566,888 + Echvi_1361 0.26 -2.9
1,566,888 + Echvi_1361 0.26 +1.0
1,566,889 - Echvi_1361 0.26 -0.6
1,566,889 - Echvi_1361 0.26 -1.0
1,566,889 - Echvi_1361 0.26 -1.4
1,566,889 - Echvi_1361 0.26 -0.4
1,566,941 - Echvi_1361 0.34 -0.8
1,567,087 - Echvi_1361 0.55 -1.0
1,567,087 - Echvi_1361 0.55 -0.8
1,567,117 + Echvi_1361 0.60 -2.2
1,567,118 - Echvi_1361 0.60 -0.6
1,567,378 + +0.8
1,567,379 - +1.3
1,567,379 - -0.0
1,567,379 - -2.6
1,567,379 - -1.2
1,567,394 + -0.7
1,567,394 + +0.1
1,567,395 - -0.1
1,567,399 + +0.1
1,567,400 - +0.1
1,567,400 - -1.2
1,567,496 + -0.4
1,567,498 + -1.6
1,567,498 + -0.3
1,567,499 - -0.6
1,567,508 - +0.1
1,567,681 + Echvi_1362 0.11 -0.1
1,567,681 + Echvi_1362 0.11 +0.4
1,567,682 - Echvi_1362 0.12 +1.0
1,567,814 + Echvi_1362 0.17 +1.6
1,567,822 + Echvi_1362 0.17 -1.2
1,567,822 + Echvi_1362 0.17 +0.6
1,567,937 + Echvi_1362 0.22 -1.7
1,567,937 + Echvi_1362 0.22 -1.8
1,568,014 - Echvi_1362 0.25 -0.8
1,568,068 + Echvi_1362 0.27 +0.0
1,568,069 - Echvi_1362 0.27 +0.4
1,568,071 + Echvi_1362 0.27 -0.4
1,568,079 + Echvi_1362 0.28 -0.4
1,568,082 + Echvi_1362 0.28 -0.2
1,568,082 + Echvi_1362 0.28 +0.4
1,568,082 + Echvi_1362 0.28 +0.9
1,568,083 - Echvi_1362 0.28 +0.1
1,568,086 + Echvi_1362 0.28 -0.5
1,568,086 + Echvi_1362 0.28 +0.1
1,568,086 + Echvi_1362 0.28 -0.1
1,568,086 + Echvi_1362 0.28 +0.2
1,568,087 - Echvi_1362 0.28 +0.8
1,568,165 - Echvi_1362 0.31 +2.6
1,568,171 - Echvi_1362 0.31 -0.8
1,568,181 - Echvi_1362 0.32 -1.5
1,568,221 + Echvi_1362 0.33 -0.9
1,568,221 + Echvi_1362 0.33 -0.5
1,568,224 + Echvi_1362 0.34 +0.3
1,568,250 + Echvi_1362 0.35 -1.6
1,568,250 + Echvi_1362 0.35 -1.4
1,568,250 + Echvi_1362 0.35 -0.6
1,568,251 - Echvi_1362 0.35 -1.6
1,568,251 - Echvi_1362 0.35 -1.5
1,568,254 + Echvi_1362 0.35 -0.2

Or see this region's nucleotide sequence