Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0591

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0590 and Echvi_0591 are separated by 6 nucleotidesEchvi_0591 and Echvi_0592 are separated by 75 nucleotides Echvi_0590: Echvi_0590 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 668,095 to 669,210 _0590 Echvi_0591: Echvi_0591 - Molecular chaperone GrpE (heat shock protein), at 669,217 to 669,837 _0591 Echvi_0592: Echvi_0592 - Obg family GTPase CgtA, at 669,913 to 670,905 _0592 Position (kb) 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1at 668.366 kb on - strand, within Echvi_0590at 668.402 kb on + strand, within Echvi_0590at 668.403 kb on - strandat 668.411 kb on + strand, within Echvi_0590at 668.411 kb on + strand, within Echvi_0590at 668.443 kb on - strand, within Echvi_0590at 669.211 kb on - strandat 669.214 kb on - strandat 669.214 kb on - strandat 669.219 kb on - strandat 669.770 kb on - strand, within Echvi_0591at 669.770 kb on - strand, within Echvi_0591at 669.770 kb on - strand, within Echvi_0591at 669.805 kb on - strandat 669.805 kb on - strandat 669.805 kb on - strandat 669.823 kb on - strandat 669.838 kb on - strandat 669.838 kb on - strandat 669.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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668,366 - Echvi_0590 0.24 +0.2
668,402 + Echvi_0590 0.28 -2.9
668,403 - +1.2
668,411 + Echvi_0590 0.28 -1.0
668,411 + Echvi_0590 0.28 +0.2
668,443 - Echvi_0590 0.31 -0.2
669,211 - +0.1
669,214 - +0.9
669,214 - -0.5
669,219 - +0.9
669,770 - Echvi_0591 0.89 -0.6
669,770 - Echvi_0591 0.89 +0.2
669,770 - Echvi_0591 0.89 -2.4
669,805 - +0.2
669,805 - +0.9
669,805 - +0.1
669,823 - -0.1
669,838 - +1.1
669,838 - -0.6
669,838 - -1.6

Or see this region's nucleotide sequence