Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0368

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0367 and Echvi_0368 are separated by 61 nucleotidesEchvi_0368 and Echvi_0369 are separated by 79 nucleotides Echvi_0367: Echvi_0367 - hypothetical protein, at 395,055 to 395,969 _0367 Echvi_0368: Echvi_0368 - hypothetical protein, at 396,031 to 396,132 _0368 Echvi_0369: Echvi_0369 - ATPases with chaperone activity, ATP-binding subunit, at 396,212 to 398,740 _0369 Position (kb) 396 397Strain fitness (log2 ratio) -2 -1 0 1 2at 395.065 kb on + strandat 395.069 kb on - strandat 395.108 kb on + strandat 395.173 kb on + strand, within Echvi_0367at 395.174 kb on - strand, within Echvi_0367at 395.242 kb on + strand, within Echvi_0367at 395.267 kb on + strand, within Echvi_0367at 395.292 kb on - strand, within Echvi_0367at 395.328 kb on + strand, within Echvi_0367at 395.338 kb on - strand, within Echvi_0367at 395.359 kb on - strand, within Echvi_0367at 395.381 kb on - strand, within Echvi_0367at 395.388 kb on - strand, within Echvi_0367at 395.406 kb on - strand, within Echvi_0367at 395.414 kb on + strand, within Echvi_0367at 395.415 kb on - strand, within Echvi_0367at 395.416 kb on + strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.502 kb on + strandat 395.563 kb on + strand, within Echvi_0367at 395.576 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.597 kb on - strand, within Echvi_0367at 395.597 kb on - strand, within Echvi_0367at 395.602 kb on + strand, within Echvi_0367at 395.640 kb on - strand, within Echvi_0367at 395.659 kb on + strand, within Echvi_0367at 395.659 kb on + strand, within Echvi_0367at 395.660 kb on - strand, within Echvi_0367at 395.660 kb on - strand, within Echvi_0367at 395.712 kb on - strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.714 kb on - strand, within Echvi_0367at 395.750 kb on - strand, within Echvi_0367at 395.759 kb on + strand, within Echvi_0367at 395.759 kb on + strand, within Echvi_0367at 395.760 kb on - strand, within Echvi_0367at 395.891 kb on - strandat 395.891 kb on - strandat 395.892 kb on + strandat 395.893 kb on - strandat 395.912 kb on - strandat 395.936 kb on + strandat 395.948 kb on + strandat 396.015 kb on + strandat 396.027 kb on + strandat 396.032 kb on + strandat 396.032 kb on + strandat 396.032 kb on + strandat 396.053 kb on + strand, within Echvi_0368at 396.053 kb on + strand, within Echvi_0368at 396.053 kb on + strand, within Echvi_0368at 396.090 kb on + strand, within Echvi_0368at 396.091 kb on - strand, within Echvi_0368at 396.094 kb on - strand, within Echvi_0368at 396.094 kb on - strand, within Echvi_0368at 396.094 kb on - strand, within Echvi_0368at 396.203 kb on + strandat 396.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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395,065 + +1.7
395,069 - -0.5
395,108 + -0.2
395,173 + Echvi_0367 0.13 +0.6
395,174 - Echvi_0367 0.13 +0.1
395,242 + Echvi_0367 0.20 -0.0
395,267 + Echvi_0367 0.23 +0.1
395,292 - Echvi_0367 0.26 +0.3
395,328 + Echvi_0367 0.30 -0.3
395,338 - Echvi_0367 0.31 +0.2
395,359 - Echvi_0367 0.33 +2.2
395,381 - Echvi_0367 0.36 -0.6
395,388 - Echvi_0367 0.36 -1.4
395,406 - Echvi_0367 0.38 -0.0
395,414 + Echvi_0367 0.39 -0.4
395,415 - Echvi_0367 0.39 -0.7
395,416 + Echvi_0367 0.39 -0.2
395,417 - Echvi_0367 0.40 -0.7
395,417 - Echvi_0367 0.40 +0.2
395,417 - Echvi_0367 0.40 +0.4
395,417 - Echvi_0367 0.40 +1.9
395,417 - Echvi_0367 0.40 -0.7
395,417 - Echvi_0367 0.40 -0.8
395,502 + +0.9
395,563 + Echvi_0367 0.56 -0.1
395,576 + Echvi_0367 0.57 +0.8
395,596 + Echvi_0367 0.59 -0.4
395,596 + Echvi_0367 0.59 -0.1
395,596 + Echvi_0367 0.59 -1.3
395,596 + Echvi_0367 0.59 -0.4
395,596 + Echvi_0367 0.59 -0.3
395,597 - Echvi_0367 0.59 -0.7
395,597 - Echvi_0367 0.59 +1.0
395,602 + Echvi_0367 0.60 +0.2
395,640 - Echvi_0367 0.64 +0.0
395,659 + Echvi_0367 0.66 -1.6
395,659 + Echvi_0367 0.66 -0.5
395,660 - Echvi_0367 0.66 +0.0
395,660 - Echvi_0367 0.66 -0.5
395,712 - Echvi_0367 0.72 -1.2
395,713 + Echvi_0367 0.72 -1.1
395,713 + Echvi_0367 0.72 +0.9
395,713 + Echvi_0367 0.72 -0.1
395,714 - Echvi_0367 0.72 +2.1
395,750 - Echvi_0367 0.76 -0.2
395,759 + Echvi_0367 0.77 -1.0
395,759 + Echvi_0367 0.77 +0.4
395,760 - Echvi_0367 0.77 +1.2
395,891 - -0.3
395,891 - +0.1
395,892 + +0.1
395,893 - +0.4
395,912 - -1.3
395,936 + +0.5
395,948 + -1.8
396,015 + +0.5
396,027 + -0.3
396,032 + +0.7
396,032 + -1.2
396,032 + -0.5
396,053 + Echvi_0368 0.22 -1.0
396,053 + Echvi_0368 0.22 -2.7
396,053 + Echvi_0368 0.22 -0.7
396,090 + Echvi_0368 0.58 -0.7
396,091 - Echvi_0368 0.59 -0.6
396,094 - Echvi_0368 0.62 +0.1
396,094 - Echvi_0368 0.62 -2.5
396,094 - Echvi_0368 0.62 +0.3
396,203 + +0.1
396,204 - +0.7

Or see this region's nucleotide sequence