Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0207

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0206 and Echvi_0207 are separated by 906 nucleotidesEchvi_0207 and Echvi_0208 are separated by 153 nucleotidesEchvi_0208 and Echvi_0209 are separated by 14 nucleotides Echvi_0206: Echvi_0206 - Transcriptional regulators of sugar metabolism, at 225,032 to 225,793 _0206 Echvi_0207: Echvi_0207 - Transposase DDE domain., at 226,700 to 227,596 _0207 Echvi_0208: Echvi_0208 - hypothetical protein, at 227,750 to 228,499 _0208 Echvi_0209: Echvi_0209 - hypothetical protein, at 228,514 to 229,602 _0209 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 225.716 kb on + strand, within Echvi_0206at 225.716 kb on + strand, within Echvi_0206at 225.800 kb on - strandat 225.934 kb on + strandat 226.066 kb on + strandat 226.112 kb on + strandat 226.131 kb on + strandat 226.158 kb on - strandat 226.188 kb on - strandat 226.402 kb on + strandat 226.507 kb on + strandat 226.508 kb on - strandat 226.541 kb on + strandat 226.542 kb on - strandat 226.542 kb on - strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.546 kb on - strandat 226.546 kb on - strandat 226.566 kb on - strandat 226.566 kb on - strandat 226.622 kb on + strandat 226.623 kb on - strandat 226.635 kb on - strandat 226.667 kb on - strandat 226.713 kb on - strandat 227.873 kb on + strand, within Echvi_0208at 227.874 kb on - strand, within Echvi_0208at 227.885 kb on + strand, within Echvi_0208at 228.006 kb on - strand, within Echvi_0208at 228.054 kb on + strand, within Echvi_0208at 228.055 kb on - strand, within Echvi_0208at 228.128 kb on - strand, within Echvi_0208at 228.128 kb on - strand, within Echvi_0208at 228.164 kb on + strand, within Echvi_0208at 228.164 kb on + strand, within Echvi_0208at 228.165 kb on - strand, within Echvi_0208at 228.264 kb on + strand, within Echvi_0208at 228.264 kb on + strand, within Echvi_0208at 228.265 kb on - strand, within Echvi_0208at 228.265 kb on - strand, within Echvi_0208at 228.338 kb on + strand, within Echvi_0208at 228.361 kb on + strand, within Echvi_0208at 228.522 kb on - strandat 228.543 kb on + strandat 228.543 kb on + strandat 228.544 kb on - strandat 228.544 kb on - strandat 228.545 kb on + strandat 228.545 kb on + strandat 228.545 kb on + strandat 228.546 kb on - strandat 228.546 kb on - strandat 228.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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225,716 + Echvi_0206 0.90 -2.0
225,716 + Echvi_0206 0.90 -2.3
225,800 - -0.1
225,934 + -3.4
226,066 + -1.3
226,112 + -0.6
226,131 + -1.9
226,158 - -0.6
226,188 - -0.7
226,402 + +0.1
226,507 + +0.5
226,508 - -1.4
226,541 + +2.9
226,542 - +0.3
226,542 - -1.3
226,545 + +0.2
226,545 + +2.1
226,545 + +0.5
226,545 + +1.0
226,545 + +2.9
226,545 + +0.6
226,545 + +0.2
226,545 + -0.5
226,546 - +2.1
226,546 - -1.4
226,566 - +0.0
226,566 - -0.3
226,622 + +0.1
226,623 - +0.8
226,635 - +0.1
226,667 - -0.5
226,713 - -1.5
227,873 + Echvi_0208 0.16 -0.1
227,874 - Echvi_0208 0.17 -0.4
227,885 + Echvi_0208 0.18 +0.5
228,006 - Echvi_0208 0.34 +0.5
228,054 + Echvi_0208 0.41 +0.9
228,055 - Echvi_0208 0.41 +1.0
228,128 - Echvi_0208 0.50 +0.7
228,128 - Echvi_0208 0.50 +0.3
228,164 + Echvi_0208 0.55 +0.2
228,164 + Echvi_0208 0.55 -0.3
228,165 - Echvi_0208 0.55 +0.8
228,264 + Echvi_0208 0.69 +0.5
228,264 + Echvi_0208 0.69 +1.1
228,265 - Echvi_0208 0.69 -1.4
228,265 - Echvi_0208 0.69 -0.2
228,338 + Echvi_0208 0.78 +0.1
228,361 + Echvi_0208 0.81 +1.0
228,522 - -0.4
228,543 + +0.2
228,543 + +0.6
228,544 - -0.6
228,544 - +0.1
228,545 + +0.2
228,545 + -0.0
228,545 + -1.0
228,546 - +0.5
228,546 - +0.2
228,546 - -0.6

Or see this region's nucleotide sequence