Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0194

Experiment: m.b. perchlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0193 and Echvi_0194 are separated by 57 nucleotidesEchvi_0194 and Echvi_0195 are separated by 65 nucleotidesEchvi_0195 and Echvi_0196 are separated by 82 nucleotides Echvi_0193: Echvi_0193 - NAD dependent epimerase/dehydratase family., at 210,167 to 211,129 _0193 Echvi_0194: Echvi_0194 - Protein of unknown function (DUF3109)., at 211,187 to 211,837 _0194 Echvi_0195: Echvi_0195 - RNA, at 211,903 to 212,222 _0195 Echvi_0196: Echvi_0196 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 212,305 to 213,462 _0196 Position (kb) 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.230 kb on + strandat 210.230 kb on + strandat 210.231 kb on - strandat 210.245 kb on - strandat 210.349 kb on + strand, within Echvi_0193at 210.349 kb on + strand, within Echvi_0193at 210.350 kb on - strand, within Echvi_0193at 210.366 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.378 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strandat 210.480 kb on - strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.509 kb on - strand, within Echvi_0193at 210.509 kb on - strand, within Echvi_0193at 210.520 kb on + strand, within Echvi_0193at 210.592 kb on + strandat 210.593 kb on - strand, within Echvi_0193at 210.593 kb on - strand, within Echvi_0193at 210.639 kb on - strand, within Echvi_0193at 210.649 kb on + strand, within Echvi_0193at 210.649 kb on + strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.669 kb on + strand, within Echvi_0193at 210.669 kb on + strand, within Echvi_0193at 210.670 kb on - strand, within Echvi_0193at 210.754 kb on + strand, within Echvi_0193at 210.806 kb on + strand, within Echvi_0193at 210.806 kb on + strand, within Echvi_0193at 210.806 kb on + strand, within Echvi_0193at 210.807 kb on - strand, within Echvi_0193at 210.807 kb on - strand, within Echvi_0193at 210.866 kb on + strand, within Echvi_0193at 210.902 kb on + strand, within Echvi_0193at 210.980 kb on + strand, within Echvi_0193at 210.987 kb on - strand, within Echvi_0193at 210.987 kb on - strand, within Echvi_0193at 210.998 kb on + strand, within Echvi_0193at 210.998 kb on + strand, within Echvi_0193at 210.999 kb on - strand, within Echvi_0193at 211.117 kb on + strandat 211.119 kb on + strandat 211.119 kb on + strandat 211.120 kb on - strandat 211.120 kb on - strandat 211.142 kb on - strandat 211.159 kb on + strandat 211.160 kb on - strandat 211.178 kb on - strandat 211.184 kb on + strandat 211.273 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.379 kb on + strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.380 kb on - strand, within Echvi_0194at 211.391 kb on + strand, within Echvi_0194at 211.409 kb on + strand, within Echvi_0194at 211.476 kb on + strand, within Echvi_0194at 211.502 kb on - strand, within Echvi_0194at 211.540 kb on + strand, within Echvi_0194at 211.553 kb on + strand, within Echvi_0194at 211.554 kb on - strand, within Echvi_0194at 211.581 kb on + strand, within Echvi_0194at 211.582 kb on - strand, within Echvi_0194at 211.594 kb on + strand, within Echvi_0194at 211.740 kb on - strand, within Echvi_0194at 211.742 kb on + strand, within Echvi_0194at 211.742 kb on + strand, within Echvi_0194at 211.743 kb on - strandat 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.743 kb on - strand, within Echvi_0194at 211.745 kb on + strand, within Echvi_0194at 211.750 kb on + strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.751 kb on - strand, within Echvi_0194at 211.770 kb on - strand, within Echvi_0194at 211.843 kb on + strandat 211.843 kb on + strandat 211.843 kb on + strandat 211.845 kb on + strandat 212.300 kb on + strandat 212.300 kb on + strandat 212.322 kb on + strandat 212.408 kb on + strandat 212.408 kb on + strandat 212.408 kb on + strandat 212.427 kb on - strand, within Echvi_0196at 212.507 kb on - strand, within Echvi_0196at 212.630 kb on + strand, within Echvi_0196at 212.740 kb on - strand, within Echvi_0196at 212.800 kb on - strand, within Echvi_0196

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
remove
210,230 + -0.0
210,230 + +1.7
210,231 - -1.7
210,245 - -0.4
210,349 + Echvi_0193 0.19 +0.7
210,349 + Echvi_0193 0.19 -0.2
210,350 - Echvi_0193 0.19 +0.2
210,366 + Echvi_0193 0.21 +1.3
210,377 + Echvi_0193 0.22 -0.7
210,377 + Echvi_0193 0.22 -0.0
210,377 + Echvi_0193 0.22 +0.5
210,377 + Echvi_0193 0.22 -0.1
210,378 - Echvi_0193 0.22 -0.5
210,476 - Echvi_0193 0.32 -0.7
210,476 - Echvi_0193 0.32 +0.5
210,476 - Echvi_0193 0.32 +0.3
210,476 - Echvi_0193 0.32 +0.4
210,477 + Echvi_0193 0.32 +0.6
210,477 + Echvi_0193 0.32 -0.3
210,477 + Echvi_0193 0.32 -0.2
210,477 + Echvi_0193 0.32 -0.9
210,477 + Echvi_0193 0.32 -0.1
210,477 + Echvi_0193 0.32 +1.3
210,478 - Echvi_0193 0.32 -0.4
210,478 - Echvi_0193 0.32 -1.5
210,478 - Echvi_0193 0.32 +0.1
210,478 - Echvi_0193 0.32 +0.4
210,479 + Echvi_0193 0.32 +0.4
210,479 + Echvi_0193 0.32 -0.7
210,479 + Echvi_0193 0.32 +0.7
210,479 + Echvi_0193 0.32 +0.1
210,479 + Echvi_0193 0.32 -0.8
210,479 + Echvi_0193 0.32 +0.5
210,480 - Echvi_0193 0.33 -0.5
210,480 - Echvi_0193 0.33 -0.5
210,480 - Echvi_0193 0.33 -1.0
210,480 - +0.1
210,480 - Echvi_0193 0.33 -0.2
210,485 + Echvi_0193 0.33 +0.5
210,485 + Echvi_0193 0.33 -0.7
210,485 + Echvi_0193 0.33 +0.9
210,485 + Echvi_0193 0.33 -0.1
210,486 - Echvi_0193 0.33 -0.8
210,486 - Echvi_0193 0.33 -0.9
210,486 - Echvi_0193 0.33 -0.0
210,497 + Echvi_0193 0.34 -0.2
210,497 + Echvi_0193 0.34 -0.3
210,497 + Echvi_0193 0.34 +0.5
210,497 + Echvi_0193 0.34 -1.1
210,497 + Echvi_0193 0.34 +0.5
210,497 + Echvi_0193 0.34 -0.4
210,498 - Echvi_0193 0.34 -0.1
210,498 - Echvi_0193 0.34 +0.3
210,498 - Echvi_0193 0.34 -3.0
210,508 + Echvi_0193 0.35 -0.4
210,508 + Echvi_0193 0.35 +0.4
210,508 + Echvi_0193 0.35 +1.0
210,509 - Echvi_0193 0.36 -0.0
210,509 - Echvi_0193 0.36 -0.6
210,520 + Echvi_0193 0.37 -0.8
210,592 + -0.5
210,593 - Echvi_0193 0.44 -0.4
210,593 - Echvi_0193 0.44 -0.8
210,639 - Echvi_0193 0.49 -0.0
210,649 + Echvi_0193 0.50 +0.2
210,649 + Echvi_0193 0.50 -0.7
210,650 - Echvi_0193 0.50 -1.9
210,650 - Echvi_0193 0.50 +0.3
210,650 - Echvi_0193 0.50 +0.6
210,669 + Echvi_0193 0.52 +1.5
210,669 + Echvi_0193 0.52 +1.7
210,670 - Echvi_0193 0.52 +0.1
210,754 + Echvi_0193 0.61 +0.3
210,806 + Echvi_0193 0.66 -1.8
210,806 + Echvi_0193 0.66 -1.1
210,806 + Echvi_0193 0.66 +0.2
210,807 - Echvi_0193 0.66 +0.7
210,807 - Echvi_0193 0.66 -0.2
210,866 + Echvi_0193 0.73 +2.0
210,902 + Echvi_0193 0.76 -0.3
210,980 + Echvi_0193 0.84 -0.6
210,987 - Echvi_0193 0.85 -2.5
210,987 - Echvi_0193 0.85 -0.4
210,998 + Echvi_0193 0.86 +0.1
210,998 + Echvi_0193 0.86 +1.3
210,999 - Echvi_0193 0.86 +0.3
211,117 + +0.6
211,119 + -0.2
211,119 + -0.5
211,120 - +1.9
211,120 - +0.3
211,142 - +0.1
211,159 + +0.3
211,160 - +0.8
211,178 - -0.1
211,184 + -0.5
211,273 + Echvi_0194 0.13 +0.5
211,379 + Echvi_0194 0.29 +0.5
211,379 + Echvi_0194 0.29 -1.5
211,379 + Echvi_0194 0.29 +0.5
211,380 - Echvi_0194 0.30 +0.4
211,380 - Echvi_0194 0.30 -0.1
211,380 - Echvi_0194 0.30 +0.2
211,380 - Echvi_0194 0.30 -2.8
211,391 + Echvi_0194 0.31 -0.5
211,409 + Echvi_0194 0.34 -0.9
211,476 + Echvi_0194 0.44 -1.5
211,502 - Echvi_0194 0.48 -0.8
211,540 + Echvi_0194 0.54 -3.4
211,553 + Echvi_0194 0.56 -0.3
211,554 - Echvi_0194 0.56 -1.0
211,581 + Echvi_0194 0.61 -0.9
211,582 - Echvi_0194 0.61 -1.3
211,594 + Echvi_0194 0.63 +0.8
211,740 - Echvi_0194 0.85 +0.8
211,742 + Echvi_0194 0.85 +0.1
211,742 + Echvi_0194 0.85 +0.1
211,743 - -0.1
211,743 - Echvi_0194 0.85 -1.0
211,743 - Echvi_0194 0.85 -0.3
211,743 - Echvi_0194 0.85 +0.1
211,743 - Echvi_0194 0.85 -1.2
211,745 + Echvi_0194 0.86 -0.3
211,750 + Echvi_0194 0.86 -0.4
211,751 - Echvi_0194 0.87 -0.5
211,751 - Echvi_0194 0.87 +0.5
211,751 - Echvi_0194 0.87 -1.0
211,770 - Echvi_0194 0.90 -1.1
211,843 + -0.2
211,843 + -1.9
211,843 + +0.4
211,845 + +0.8
212,300 + -0.9
212,300 + -0.5
212,322 + +1.3
212,408 + -0.1
212,408 + +0.6
212,408 + +0.1
212,427 - Echvi_0196 0.11 -0.4
212,507 - Echvi_0196 0.17 -0.2
212,630 + Echvi_0196 0.28 -0.4
212,740 - Echvi_0196 0.38 -0.3
212,800 - Echvi_0196 0.43 +0.2

Or see this region's nucleotide sequence