Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0012

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0011 and Echvi_0012 overlap by 4 nucleotidesEchvi_0012 and Echvi_0013 are separated by 1 nucleotides Echvi_0011: Echvi_0011 - ABC-type transport system, involved in lipoprotein release, permease component, at 7,897 to 9,123 _0011 Echvi_0012: Echvi_0012 - ABC-type antimicrobial peptide transport system, ATPase component, at 9,120 to 9,755 _0012 Echvi_0013: Echvi_0013 - Signal transduction histidine kinase, at 9,757 to 10,932 _0013 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1 2at 8.135 kb on - strand, within Echvi_0011at 8.135 kb on - strand, within Echvi_0011at 8.143 kb on - strand, within Echvi_0011at 8.153 kb on - strand, within Echvi_0011at 8.153 kb on - strand, within Echvi_0011at 8.153 kb on - strand, within Echvi_0011at 8.212 kb on + strand, within Echvi_0011at 8.213 kb on - strand, within Echvi_0011at 8.222 kb on + strand, within Echvi_0011at 8.266 kb on - strand, within Echvi_0011at 8.370 kb on + strand, within Echvi_0011at 8.408 kb on + strand, within Echvi_0011at 8.408 kb on + strand, within Echvi_0011at 8.408 kb on + strand, within Echvi_0011at 8.544 kb on + strand, within Echvi_0011at 8.545 kb on - strand, within Echvi_0011at 8.545 kb on - strand, within Echvi_0011at 8.545 kb on - strand, within Echvi_0011at 8.600 kb on + strand, within Echvi_0011at 8.768 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.775 kb on - strand, within Echvi_0011at 8.793 kb on + strandat 8.793 kb on + strand, within Echvi_0011at 8.804 kb on + strand, within Echvi_0011at 8.905 kb on - strand, within Echvi_0011at 8.910 kb on - strand, within Echvi_0011at 9.029 kb on - strandat 9.030 kb on + strandat 9.030 kb on + strandat 9.031 kb on - strandat 9.031 kb on - strandat 9.075 kb on + strandat 9.096 kb on - strandat 9.096 kb on - strandat 9.106 kb on - strandat 9.117 kb on + strandat 9.117 kb on + strandat 9.118 kb on - strandat 9.182 kb on + strandat 9.182 kb on + strandat 9.188 kb on + strand, within Echvi_0012at 9.189 kb on - strand, within Echvi_0012at 9.189 kb on - strand, within Echvi_0012at 9.189 kb on - strand, within Echvi_0012at 9.327 kb on + strand, within Echvi_0012at 9.327 kb on + strand, within Echvi_0012at 9.443 kb on - strand, within Echvi_0012at 9.450 kb on + strand, within Echvi_0012at 9.450 kb on + strand, within Echvi_0012at 9.451 kb on - strand, within Echvi_0012at 9.473 kb on + strand, within Echvi_0012at 9.473 kb on + strand, within Echvi_0012at 9.473 kb on + strand, within Echvi_0012at 9.473 kb on + strand, within Echvi_0012at 9.484 kb on - strand, within Echvi_0012at 9.559 kb on + strand, within Echvi_0012at 9.563 kb on + strand, within Echvi_0012at 9.564 kb on - strand, within Echvi_0012at 9.564 kb on - strand, within Echvi_0012at 9.660 kb on + strand, within Echvi_0012at 9.661 kb on - strand, within Echvi_0012at 9.727 kb on + strandat 9.738 kb on - strandat 9.738 kb on - strandat 9.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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8,135 - Echvi_0011 0.19 +1.0
8,135 - Echvi_0011 0.19 +0.0
8,143 - Echvi_0011 0.20 +0.0
8,153 - Echvi_0011 0.21 +0.6
8,153 - Echvi_0011 0.21 +0.5
8,153 - Echvi_0011 0.21 +0.8
8,212 + Echvi_0011 0.26 +1.0
8,213 - Echvi_0011 0.26 -0.1
8,222 + Echvi_0011 0.26 +1.6
8,266 - Echvi_0011 0.30 +0.5
8,370 + Echvi_0011 0.39 -0.3
8,408 + Echvi_0011 0.42 +1.5
8,408 + Echvi_0011 0.42 +0.6
8,408 + Echvi_0011 0.42 +0.6
8,544 + Echvi_0011 0.53 +0.8
8,545 - Echvi_0011 0.53 +0.7
8,545 - Echvi_0011 0.53 +1.2
8,545 - Echvi_0011 0.53 +0.5
8,600 + Echvi_0011 0.57 +0.3
8,768 + Echvi_0011 0.71 +0.6
8,774 + Echvi_0011 0.71 +1.0
8,774 + Echvi_0011 0.71 +0.8
8,774 + Echvi_0011 0.71 -1.1
8,774 + Echvi_0011 0.71 -0.0
8,775 - Echvi_0011 0.72 +0.1
8,793 + +2.1
8,793 + Echvi_0011 0.73 +0.5
8,804 + Echvi_0011 0.74 +0.3
8,905 - Echvi_0011 0.82 +0.5
8,910 - Echvi_0011 0.83 +0.2
9,029 - +1.1
9,030 + +0.2
9,030 + +0.6
9,031 - +0.2
9,031 - +1.0
9,075 + -0.5
9,096 - +2.2
9,096 - +0.4
9,106 - +0.4
9,117 + -0.1
9,117 + -0.1
9,118 - +0.4
9,182 + +1.4
9,182 + +1.1
9,188 + Echvi_0012 0.11 +1.5
9,189 - Echvi_0012 0.11 +0.1
9,189 - Echvi_0012 0.11 +0.6
9,189 - Echvi_0012 0.11 +0.9
9,327 + Echvi_0012 0.33 +0.0
9,327 + Echvi_0012 0.33 +1.1
9,443 - Echvi_0012 0.51 +1.1
9,450 + Echvi_0012 0.52 +0.5
9,450 + Echvi_0012 0.52 +1.3
9,451 - Echvi_0012 0.52 +0.3
9,473 + Echvi_0012 0.56 +0.5
9,473 + Echvi_0012 0.56 +0.3
9,473 + Echvi_0012 0.56 -0.1
9,473 + Echvi_0012 0.56 +1.8
9,484 - Echvi_0012 0.57 +0.1
9,559 + Echvi_0012 0.69 +0.1
9,563 + Echvi_0012 0.70 -0.1
9,564 - Echvi_0012 0.70 +0.4
9,564 - Echvi_0012 0.70 +0.6
9,660 + Echvi_0012 0.85 +0.7
9,661 - Echvi_0012 0.85 +1.9
9,727 + +0.9
9,738 - +0.6
9,738 - +0.7
9,755 + +0.5

Or see this region's nucleotide sequence