Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4544

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4542 and EX28DRAFT_4543 are separated by 11 nucleotidesEX28DRAFT_4543 and EX28DRAFT_4544 are separated by 49 nucleotidesEX28DRAFT_4544 and EX28DRAFT_4545 are separated by 15 nucleotides EX28DRAFT_4542: EX28DRAFT_4542 - Bacterial nucleoid DNA-binding protein, at 24,833 to 25,105 _4542 EX28DRAFT_4543: EX28DRAFT_4543 - Protein of unknown function (DUF1481), at 25,117 to 25,809 _4543 EX28DRAFT_4544: EX28DRAFT_4544 - phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 25,859 to 27,151 _4544 EX28DRAFT_4545: EX28DRAFT_4545 - AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful), at 27,167 to 28,756 _4545 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 24.859 kb on - strandat 24.895 kb on + strand, within EX28DRAFT_4542at 24.913 kb on + strand, within EX28DRAFT_4542at 25.006 kb on + strand, within EX28DRAFT_4542at 25.079 kb on - strandat 25.099 kb on + strandat 25.103 kb on + strandat 25.104 kb on - strandat 25.129 kb on - strandat 25.344 kb on + strand, within EX28DRAFT_4543at 25.344 kb on + strand, within EX28DRAFT_4543at 25.344 kb on + strand, within EX28DRAFT_4543at 25.345 kb on - strand, within EX28DRAFT_4543at 25.345 kb on - strand, within EX28DRAFT_4543at 25.345 kb on - strand, within EX28DRAFT_4543at 25.406 kb on - strand, within EX28DRAFT_4543at 25.406 kb on - strand, within EX28DRAFT_4543at 25.465 kb on - strand, within EX28DRAFT_4543at 25.679 kb on + strand, within EX28DRAFT_4543at 25.679 kb on + strand, within EX28DRAFT_4543at 25.679 kb on + strand, within EX28DRAFT_4543at 25.680 kb on - strand, within EX28DRAFT_4543at 25.680 kb on - strand, within EX28DRAFT_4543at 25.680 kb on - strand, within EX28DRAFT_4543at 25.680 kb on - strand, within EX28DRAFT_4543at 25.680 kb on - strand, within EX28DRAFT_4543at 25.680 kb on - strand, within EX28DRAFT_4543at 25.779 kb on + strandat 25.812 kb on + strandat 25.813 kb on - strandat 26.118 kb on + strand, within EX28DRAFT_4544at 27.169 kb on - strandat 28.041 kb on + strand, within EX28DRAFT_4545at 28.041 kb on + strand, within EX28DRAFT_4545

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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24,859 - -4.4
24,895 + EX28DRAFT_4542 0.23 -1.8
24,913 + EX28DRAFT_4542 0.29 -1.2
25,006 + EX28DRAFT_4542 0.63 -1.6
25,079 - -0.6
25,099 + -1.2
25,103 + -0.9
25,104 - -1.4
25,129 - -1.2
25,344 + EX28DRAFT_4543 0.33 +1.4
25,344 + EX28DRAFT_4543 0.33 -0.4
25,344 + EX28DRAFT_4543 0.33 +0.7
25,345 - EX28DRAFT_4543 0.33 +0.7
25,345 - EX28DRAFT_4543 0.33 +1.0
25,345 - EX28DRAFT_4543 0.33 -0.4
25,406 - EX28DRAFT_4543 0.42 -0.3
25,406 - EX28DRAFT_4543 0.42 -1.6
25,465 - EX28DRAFT_4543 0.50 -0.0
25,679 + EX28DRAFT_4543 0.81 +0.5
25,679 + EX28DRAFT_4543 0.81 +0.9
25,679 + EX28DRAFT_4543 0.81 -0.3
25,680 - EX28DRAFT_4543 0.81 -0.1
25,680 - EX28DRAFT_4543 0.81 +0.3
25,680 - EX28DRAFT_4543 0.81 -0.2
25,680 - EX28DRAFT_4543 0.81 +0.8
25,680 - EX28DRAFT_4543 0.81 +0.5
25,680 - EX28DRAFT_4543 0.81 -0.2
25,779 + +1.3
25,812 + +0.2
25,813 - -0.0
26,118 + EX28DRAFT_4544 0.20 -1.7
27,169 - -0.8
28,041 + EX28DRAFT_4545 0.55 +2.5
28,041 + EX28DRAFT_4545 0.55 -0.9

Or see this region's nucleotide sequence