Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4527 and EX28DRAFT_4528 are separated by 114 nucleotides EX28DRAFT_4528 and EX28DRAFT_4529 overlap by 1 nucleotides EX28DRAFT_4529 and EX28DRAFT_4530 are separated by 180 nucleotides EX28DRAFT_4530 and EX28DRAFT_4531 are separated by 336 nucleotides
EX28DRAFT_4527: EX28DRAFT_4527 - DNA-directed RNA polymerase, beta' subunit, predominant form, at 8,239 to 12,462
_4527
EX28DRAFT_4528: EX28DRAFT_4528 - Phosphotransferase system cellobiose-specific component IIA, at 12,577 to 12,894
_4528
EX28DRAFT_4529: EX28DRAFT_4529 - Phosphotransferase system cellobiose-specific component IIB, at 12,894 to 13,202
_4529
EX28DRAFT_4530: EX28DRAFT_4530 - FOG: GGDEF domain, at 13,383 to 14,924
_4530
EX28DRAFT_4531: EX28DRAFT_4531 - thiazole biosynthesis protein ThiH, at 15,261 to 16,388
_4531
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 12.562 kb on + strand at 12.562 kb on + strand at 12.570 kb on + strand at 12.570 kb on + strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.896 kb on - strand at 12.928 kb on - strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.048 kb on - strand, within EX28DRAFT_4529 at 13.143 kb on - strand, within EX28DRAFT_4529 at 13.217 kb on + strand at 13.436 kb on - strand at 13.511 kb on + strand at 13.703 kb on + strand, within EX28DRAFT_4530 at 13.749 kb on - strand, within EX28DRAFT_4530 at 13.805 kb on + strand, within EX28DRAFT_4530 at 13.870 kb on + strand, within EX28DRAFT_4530 at 13.871 kb on - strand, within EX28DRAFT_4530 at 13.902 kb on - strand, within EX28DRAFT_4530 at 13.904 kb on + strand, within EX28DRAFT_4530 at 13.967 kb on + strand, within EX28DRAFT_4530 at 13.967 kb on + strand, within EX28DRAFT_4530 at 14.005 kb on + strand, within EX28DRAFT_4530 at 14.005 kb on + strand, within EX28DRAFT_4530 at 14.135 kb on + strand, within EX28DRAFT_4530 at 14.143 kb on + strand, within EX28DRAFT_4530 at 14.144 kb on - strand, within EX28DRAFT_4530 at 14.146 kb on + strand, within EX28DRAFT_4530 at 14.146 kb on + strand, within EX28DRAFT_4530 at 14.146 kb on + strand, within EX28DRAFT_4530 at 14.147 kb on - strand, within EX28DRAFT_4530 at 14.147 kb on - strand, within EX28DRAFT_4530 at 14.149 kb on + strand, within EX28DRAFT_4530 at 14.149 kb on + strand, within EX28DRAFT_4530 at 14.150 kb on - strand, within EX28DRAFT_4530 at 14.152 kb on + strand, within EX28DRAFT_4530 at 14.176 kb on + strand, within EX28DRAFT_4530 at 14.177 kb on - strand, within EX28DRAFT_4530 at 14.227 kb on + strand, within EX28DRAFT_4530 at 14.407 kb on + strand, within EX28DRAFT_4530 at 14.456 kb on + strand, within EX28DRAFT_4530 at 14.457 kb on - strand, within EX28DRAFT_4530 at 14.526 kb on - strand, within EX28DRAFT_4530 at 14.544 kb on + strand, within EX28DRAFT_4530 at 14.544 kb on + strand, within EX28DRAFT_4530 at 14.564 kb on - strand, within EX28DRAFT_4530 at 14.695 kb on + strand, within EX28DRAFT_4530 at 14.717 kb on + strand, within EX28DRAFT_4530 at 14.718 kb on - strand, within EX28DRAFT_4530 at 14.719 kb on + strand, within EX28DRAFT_4530 at 14.720 kb on - strand, within EX28DRAFT_4530 at 14.720 kb on - strand, within EX28DRAFT_4530 at 14.720 kb on - strand, within EX28DRAFT_4530 at 14.931 kb on + strand at 14.931 kb on + strand at 14.931 kb on + strand at 14.931 kb on + strand at 14.931 kb on + strand at 14.932 kb on - strand at 14.953 kb on - strand at 14.982 kb on + strand at 14.983 kb on - strand at 15.012 kb on - strand at 15.013 kb on + strand at 15.014 kb on - strand at 15.042 kb on + strand at 15.043 kb on - strand at 15.048 kb on - strand at 15.069 kb on + strand at 15.070 kb on - strand at 15.678 kb on - strand, within EX28DRAFT_4531 at 15.678 kb on - strand, within EX28DRAFT_4531 at 15.679 kb on + strand, within EX28DRAFT_4531 at 15.679 kb on + strand, within EX28DRAFT_4531 at 15.680 kb on - strand, within EX28DRAFT_4531 at 15.680 kb on - strand, within EX28DRAFT_4531 at 15.889 kb on + strand, within EX28DRAFT_4531 at 15.889 kb on + strand, within EX28DRAFT_4531 at 15.890 kb on - strand, within EX28DRAFT_4531 at 15.890 kb on - strand, within EX28DRAFT_4531
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 12,562 + +0.4 12,562 + +0.2 12,570 + -0.1 12,570 + +0.1 12,571 - -0.2 12,571 - +0.3 12,571 - +0.2 12,896 - +0.1 12,928 - EX28DRAFT_4529 0.11 -0.2 13,024 + EX28DRAFT_4529 0.42 +0.5 13,024 + EX28DRAFT_4529 0.42 -0.2 13,024 + EX28DRAFT_4529 0.42 -0.1 13,024 + EX28DRAFT_4529 0.42 +0.0 13,048 - EX28DRAFT_4529 0.50 -0.1 13,143 - EX28DRAFT_4529 0.81 -0.4 13,217 + -0.5 13,436 - -0.7 13,511 + +0.7 13,703 + EX28DRAFT_4530 0.21 +1.5 13,749 - EX28DRAFT_4530 0.24 -0.9 13,805 + EX28DRAFT_4530 0.27 +0.2 13,870 + EX28DRAFT_4530 0.32 +0.7 13,871 - EX28DRAFT_4530 0.32 -0.2 13,902 - EX28DRAFT_4530 0.34 -2.6 13,904 + EX28DRAFT_4530 0.34 -1.1 13,967 + EX28DRAFT_4530 0.38 -0.2 13,967 + EX28DRAFT_4530 0.38 +0.4 14,005 + EX28DRAFT_4530 0.40 +0.3 14,005 + EX28DRAFT_4530 0.40 +0.5 14,135 + EX28DRAFT_4530 0.49 +0.2 14,143 + EX28DRAFT_4530 0.49 -0.6 14,144 - EX28DRAFT_4530 0.49 +0.5 14,146 + EX28DRAFT_4530 0.49 -0.7 14,146 + EX28DRAFT_4530 0.49 -0.4 14,146 + EX28DRAFT_4530 0.49 +3.4 14,147 - EX28DRAFT_4530 0.50 -0.2 14,147 - EX28DRAFT_4530 0.50 +1.4 14,149 + EX28DRAFT_4530 0.50 -0.2 14,149 + EX28DRAFT_4530 0.50 -0.9 14,150 - EX28DRAFT_4530 0.50 +1.0 14,152 + EX28DRAFT_4530 0.50 +0.0 14,176 + EX28DRAFT_4530 0.51 +0.1 14,177 - EX28DRAFT_4530 0.51 +1.5 14,227 + EX28DRAFT_4530 0.55 +0.9 14,407 + EX28DRAFT_4530 0.66 -0.1 14,456 + EX28DRAFT_4530 0.70 -0.1 14,457 - EX28DRAFT_4530 0.70 +0.7 14,526 - EX28DRAFT_4530 0.74 +1.0 14,544 + EX28DRAFT_4530 0.75 +0.5 14,544 + EX28DRAFT_4530 0.75 -0.6 14,564 - EX28DRAFT_4530 0.77 +0.0 14,695 + EX28DRAFT_4530 0.85 +0.3 14,717 + EX28DRAFT_4530 0.87 +0.6 14,718 - EX28DRAFT_4530 0.87 +0.1 14,719 + EX28DRAFT_4530 0.87 +1.3 14,720 - EX28DRAFT_4530 0.87 +0.8 14,720 - EX28DRAFT_4530 0.87 +0.4 14,720 - EX28DRAFT_4530 0.87 -0.2 14,931 + +0.4 14,931 + +0.0 14,931 + -0.3 14,931 + -0.0 14,931 + -0.1 14,932 - +0.5 14,953 - -0.1 14,982 + +1.0 14,983 - -0.9 15,012 - +1.1 15,013 + +1.1 15,014 - -0.4 15,042 + +0.5 15,043 - +1.7 15,048 - +1.9 15,069 + +0.5 15,070 - -2.8 15,678 - EX28DRAFT_4531 0.37 +2.2 15,678 - EX28DRAFT_4531 0.37 +0.3 15,679 + EX28DRAFT_4531 0.37 +0.3 15,679 + EX28DRAFT_4531 0.37 +0.4 15,680 - EX28DRAFT_4531 0.37 -1.8 15,680 - EX28DRAFT_4531 0.37 -2.4 15,889 + EX28DRAFT_4531 0.56 +0.1 15,889 + EX28DRAFT_4531 0.56 -0.0 15,890 - EX28DRAFT_4531 0.56 +0.0 15,890 - EX28DRAFT_4531 0.56 +0.1
Or see this region's nucleotide sequence