Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4502

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4500 and EX28DRAFT_4501 are separated by 76 nucleotidesEX28DRAFT_4501 and EX28DRAFT_4502 are separated by 3 nucleotidesEX28DRAFT_4502 and EX28DRAFT_4503 are separated by 2 nucleotidesEX28DRAFT_4503 and EX28DRAFT_4504 are separated by 41 nucleotides EX28DRAFT_4500: EX28DRAFT_4500 - 2-octaprenylphenol hydroxylase (EC 1.14.13.-), at 66,979 to 68,619 _4500 EX28DRAFT_4501: EX28DRAFT_4501 - twin arginine-targeting protein translocase, TatA/E family, at 68,696 to 68,950 _4501 EX28DRAFT_4502: EX28DRAFT_4502 - twin arginine-targeting protein translocase TatB, at 68,954 to 69,496 _4502 EX28DRAFT_4503: EX28DRAFT_4503 - Twin arginine targeting (Tat) protein translocase TatC, at 69,499 to 70,269 _4503 EX28DRAFT_4504: EX28DRAFT_4504 - Mg-dependent DNase, at 70,311 to 71,093 _4504 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 68.647 kb on - strandat 68.650 kb on + strandat 68.650 kb on + strandat 68.650 kb on + strandat 68.650 kb on + strandat 68.650 kb on + strandat 68.651 kb on - strandat 68.651 kb on - strandat 68.651 kb on - strandat 68.651 kb on - strandat 68.651 kb on - strandat 68.651 kb on - strandat 68.651 kb on - strandat 68.652 kb on + strandat 68.652 kb on + strandat 68.653 kb on - strandat 68.671 kb on - strandat 68.678 kb on + strandat 68.679 kb on - strandat 68.695 kb on + strandat 68.695 kb on + strandat 68.695 kb on + strandat 68.695 kb on + strandat 68.695 kb on + strandat 68.695 kb on + strandat 68.695 kb on + strandat 68.696 kb on - strandat 68.696 kb on - strandat 68.696 kb on - strandat 68.710 kb on + strandat 68.721 kb on + strandat 68.721 kb on + strandat 68.722 kb on - strand, within EX28DRAFT_4501at 68.948 kb on + strandat 69.116 kb on - strand, within EX28DRAFT_4502at 69.239 kb on + strand, within EX28DRAFT_4502at 69.240 kb on - strand, within EX28DRAFT_4502at 69.240 kb on - strand, within EX28DRAFT_4502at 69.240 kb on - strand, within EX28DRAFT_4502at 69.241 kb on + strand, within EX28DRAFT_4502at 69.290 kb on - strand, within EX28DRAFT_4502at 69.494 kb on + strandat 69.506 kb on + strandat 69.506 kb on + strandat 69.506 kb on + strandat 69.507 kb on - strandat 69.507 kb on - strandat 69.507 kb on - strandat 69.622 kb on + strand, within EX28DRAFT_4503at 69.623 kb on - strand, within EX28DRAFT_4503at 69.623 kb on - strand, within EX28DRAFT_4503at 69.623 kb on - strand, within EX28DRAFT_4503at 69.798 kb on + strand, within EX28DRAFT_4503at 69.799 kb on - strand, within EX28DRAFT_4503at 69.853 kb on + strand, within EX28DRAFT_4503at 70.068 kb on + strand, within EX28DRAFT_4503at 70.081 kb on + strand, within EX28DRAFT_4503at 70.082 kb on - strand, within EX28DRAFT_4503at 70.082 kb on - strand, within EX28DRAFT_4503at 70.083 kb on + strand, within EX28DRAFT_4503at 70.084 kb on - strand, within EX28DRAFT_4503at 70.166 kb on - strand, within EX28DRAFT_4503at 70.188 kb on - strand, within EX28DRAFT_4503at 70.205 kb on - strandat 70.242 kb on + strandat 70.242 kb on + strandat 70.296 kb on + strandat 70.296 kb on + strandat 70.296 kb on + strandat 70.297 kb on - strandat 70.297 kb on - strandat 70.297 kb on - strandat 70.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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68,647 - +0.6
68,650 + +0.9
68,650 + +0.8
68,650 + +0.2
68,650 + +0.4
68,650 + +0.8
68,651 - +0.7
68,651 - +0.5
68,651 - +0.5
68,651 - +0.5
68,651 - +0.8
68,651 - -0.2
68,651 - -0.4
68,652 + +0.5
68,652 + +0.1
68,653 - +0.5
68,671 - +0.1
68,678 + +0.3
68,679 - -0.6
68,695 + +0.4
68,695 + -1.0
68,695 + +0.2
68,695 + -0.5
68,695 + +0.5
68,695 + +0.5
68,695 + +0.3
68,696 - +0.2
68,696 - +1.7
68,696 - -0.2
68,710 + +0.1
68,721 + -0.2
68,721 + -1.2
68,722 - EX28DRAFT_4501 0.10 +0.2
68,948 + +0.2
69,116 - EX28DRAFT_4502 0.30 -0.0
69,239 + EX28DRAFT_4502 0.52 +0.1
69,240 - EX28DRAFT_4502 0.53 -0.4
69,240 - EX28DRAFT_4502 0.53 +0.5
69,240 - EX28DRAFT_4502 0.53 -0.4
69,241 + EX28DRAFT_4502 0.53 +0.2
69,290 - EX28DRAFT_4502 0.62 -0.3
69,494 + +0.3
69,506 + -1.6
69,506 + +0.5
69,506 + -0.8
69,507 - -1.0
69,507 - -0.2
69,507 - +0.5
69,622 + EX28DRAFT_4503 0.16 +0.7
69,623 - EX28DRAFT_4503 0.16 -3.6
69,623 - EX28DRAFT_4503 0.16 +0.2
69,623 - EX28DRAFT_4503 0.16 -1.4
69,798 + EX28DRAFT_4503 0.39 -0.3
69,799 - EX28DRAFT_4503 0.39 -0.5
69,853 + EX28DRAFT_4503 0.46 -0.9
70,068 + EX28DRAFT_4503 0.74 -0.6
70,081 + EX28DRAFT_4503 0.75 +0.2
70,082 - EX28DRAFT_4503 0.76 -1.5
70,082 - EX28DRAFT_4503 0.76 -0.0
70,083 + EX28DRAFT_4503 0.76 +0.9
70,084 - EX28DRAFT_4503 0.76 +0.1
70,166 - EX28DRAFT_4503 0.87 -0.2
70,188 - EX28DRAFT_4503 0.89 +2.9
70,205 - -0.4
70,242 + +0.5
70,242 + +0.7
70,296 + -0.4
70,296 + +0.5
70,296 + +0.1
70,297 - -1.3
70,297 - +0.4
70,297 - -0.1
70,297 - +0.4

Or see this region's nucleotide sequence