Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4494 and EX28DRAFT_4495 are separated by 85 nucleotides EX28DRAFT_4495 and EX28DRAFT_4496 are separated by 255 nucleotides
EX28DRAFT_4494: EX28DRAFT_4494 - methionine synthase (B12-independent) (EC 2.1.1.14), at 59,774 to 62,035
_4494
EX28DRAFT_4495: EX28DRAFT_4495 - Dienelactone hydrolase and related enzymes, at 62,121 to 62,927
_4495
EX28DRAFT_4496: EX28DRAFT_4496 - uridine phosphorylase, at 63,183 to 63,944
_4496
Position (kb) 62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 61.251 kb on - strand, within EX28DRAFT_4494 at 61.389 kb on - strand, within EX28DRAFT_4494 at 61.704 kb on - strand, within EX28DRAFT_4494 at 62.076 kb on + strand at 62.077 kb on - strand at 62.092 kb on - strand at 62.198 kb on - strand at 62.198 kb on - strand at 62.467 kb on + strand, within EX28DRAFT_4495 at 62.477 kb on + strand, within EX28DRAFT_4495 at 62.477 kb on + strand, within EX28DRAFT_4495 at 62.477 kb on + strand, within EX28DRAFT_4495 at 62.478 kb on - strand, within EX28DRAFT_4495 at 62.659 kb on + strand, within EX28DRAFT_4495 at 62.740 kb on - strand, within EX28DRAFT_4495 at 62.962 kb on - strand at 62.962 kb on - strand at 62.962 kb on - strand at 62.965 kb on + strand at 62.965 kb on + strand at 62.966 kb on - strand at 62.966 kb on - strand at 62.967 kb on + strand at 63.031 kb on - strand at 63.032 kb on + strand at 63.032 kb on + strand at 63.033 kb on - strand at 63.122 kb on - strand at 63.182 kb on + strand at 63.182 kb on + strand at 63.182 kb on + strand at 63.182 kb on + strand at 63.182 kb on + strand at 63.183 kb on - strand at 63.183 kb on - strand at 63.183 kb on - strand at 63.183 kb on - strand at 63.183 kb on - strand at 63.188 kb on + strand at 63.300 kb on - strand, within EX28DRAFT_4496 at 63.443 kb on + strand, within EX28DRAFT_4496 at 63.712 kb on + strand, within EX28DRAFT_4496 at 63.713 kb on - strand, within EX28DRAFT_4496 at 63.713 kb on - strand, within EX28DRAFT_4496 at 63.765 kb on + strand, within EX28DRAFT_4496 at 63.852 kb on - strand, within EX28DRAFT_4496
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 61,251 - EX28DRAFT_4494 0.65 +0.2 61,389 - EX28DRAFT_4494 0.71 +1.4 61,704 - EX28DRAFT_4494 0.85 -1.9 62,076 + -0.4 62,077 - -1.1 62,092 - +0.7 62,198 - +0.6 62,198 - +0.2 62,467 + EX28DRAFT_4495 0.43 +0.6 62,477 + EX28DRAFT_4495 0.44 +0.1 62,477 + EX28DRAFT_4495 0.44 +0.1 62,477 + EX28DRAFT_4495 0.44 +0.0 62,478 - EX28DRAFT_4495 0.44 +0.6 62,659 + EX28DRAFT_4495 0.67 +0.7 62,740 - EX28DRAFT_4495 0.77 +1.2 62,962 - +0.3 62,962 - +0.2 62,962 - +1.2 62,965 + +0.7 62,965 + +0.3 62,966 - -0.2 62,966 - +0.2 62,967 + +0.6 63,031 - +0.7 63,032 + +0.1 63,032 + +0.0 63,033 - +0.1 63,122 - +0.1 63,182 + +0.3 63,182 + +0.1 63,182 + -0.0 63,182 + -0.1 63,182 + +0.1 63,183 - -0.2 63,183 - -0.5 63,183 - +1.0 63,183 - -0.7 63,183 - +0.2 63,188 + +0.0 63,300 - EX28DRAFT_4496 0.15 -1.0 63,443 + EX28DRAFT_4496 0.34 +0.0 63,712 + EX28DRAFT_4496 0.69 -0.4 63,713 - EX28DRAFT_4496 0.70 +1.1 63,713 - EX28DRAFT_4496 0.70 +1.0 63,765 + EX28DRAFT_4496 0.76 +0.4 63,852 - EX28DRAFT_4496 0.88 -0.3
Or see this region's nucleotide sequence