Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4487

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4486 and EX28DRAFT_4487 are separated by 27 nucleotidesEX28DRAFT_4487 and EX28DRAFT_4488 are separated by 61 nucleotidesEX28DRAFT_4488 and EX28DRAFT_4489 overlap by 4 nucleotides EX28DRAFT_4486: EX28DRAFT_4486 - Outer membrane phospholipase A, at 51,812 to 52,681 _4486 EX28DRAFT_4487: EX28DRAFT_4487 - ATP-dependent DNA helicase RecQ, at 52,709 to 54,601 _4487 EX28DRAFT_4488: EX28DRAFT_4488 - The Resistance to Homoserine/Threonine (RhtB) Family protein, at 54,663 to 55,283 _4488 EX28DRAFT_4489: EX28DRAFT_4489 - The Resistance to Homoserine/Threonine (RhtB) Family protein, at 55,280 to 55,900 _4489 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.753 kb on - strandat 51.753 kb on - strandat 51.768 kb on + strandat 51.769 kb on - strandat 51.773 kb on - strandat 51.773 kb on - strandat 51.773 kb on - strandat 51.773 kb on - strandat 51.780 kb on + strandat 51.821 kb on + strandat 51.821 kb on + strandat 51.866 kb on + strandat 51.986 kb on + strand, within EX28DRAFT_4486at 51.987 kb on - strand, within EX28DRAFT_4486at 51.987 kb on - strand, within EX28DRAFT_4486at 51.995 kb on + strand, within EX28DRAFT_4486at 51.996 kb on - strand, within EX28DRAFT_4486at 51.996 kb on - strand, within EX28DRAFT_4486at 52.030 kb on - strand, within EX28DRAFT_4486at 52.037 kb on + strand, within EX28DRAFT_4486at 52.038 kb on - strand, within EX28DRAFT_4486at 52.211 kb on + strand, within EX28DRAFT_4486at 52.212 kb on - strand, within EX28DRAFT_4486at 52.212 kb on - strand, within EX28DRAFT_4486at 52.212 kb on - strand, within EX28DRAFT_4486at 52.291 kb on + strand, within EX28DRAFT_4486at 52.346 kb on + strand, within EX28DRAFT_4486at 52.347 kb on - strand, within EX28DRAFT_4486at 52.442 kb on + strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.445 kb on - strand, within EX28DRAFT_4486at 52.445 kb on - strand, within EX28DRAFT_4486at 52.445 kb on - strand, within EX28DRAFT_4486at 52.454 kb on + strand, within EX28DRAFT_4486at 52.511 kb on + strand, within EX28DRAFT_4486at 52.512 kb on - strand, within EX28DRAFT_4486at 52.551 kb on + strand, within EX28DRAFT_4486at 52.557 kb on - strand, within EX28DRAFT_4486at 52.584 kb on - strand, within EX28DRAFT_4486at 52.585 kb on + strand, within EX28DRAFT_4486at 52.586 kb on - strand, within EX28DRAFT_4486at 52.586 kb on - strand, within EX28DRAFT_4486at 52.595 kb on + strandat 52.596 kb on - strandat 52.625 kb on + strandat 52.672 kb on + strandat 52.789 kb on - strandat 52.941 kb on - strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.221 kb on + strand, within EX28DRAFT_4487at 53.221 kb on + strand, within EX28DRAFT_4487at 53.222 kb on - strand, within EX28DRAFT_4487at 53.255 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.378 kb on - strand, within EX28DRAFT_4487at 53.415 kb on - strand, within EX28DRAFT_4487at 53.416 kb on + strand, within EX28DRAFT_4487at 53.416 kb on + strand, within EX28DRAFT_4487at 53.416 kb on + strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.459 kb on + strand, within EX28DRAFT_4487at 53.496 kb on - strand, within EX28DRAFT_4487at 53.733 kb on - strand, within EX28DRAFT_4487at 53.999 kb on + strand, within EX28DRAFT_4487at 54.041 kb on + strand, within EX28DRAFT_4487at 54.072 kb on - strand, within EX28DRAFT_4487at 54.362 kb on + strand, within EX28DRAFT_4487at 54.363 kb on - strand, within EX28DRAFT_4487at 54.599 kb on + strandat 54.644 kb on - strandat 54.658 kb on + strandat 54.668 kb on - strandat 54.668 kb on - strandat 54.673 kb on + strandat 54.674 kb on - strandat 54.674 kb on - strandat 54.875 kb on + strand, within EX28DRAFT_4488at 54.876 kb on - strand, within EX28DRAFT_4488at 54.884 kb on + strand, within EX28DRAFT_4488at 54.903 kb on + strand, within EX28DRAFT_4488at 54.904 kb on - strand, within EX28DRAFT_4488at 55.010 kb on - strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.054 kb on - strand, within EX28DRAFT_4488at 55.155 kb on - strand, within EX28DRAFT_4488at 55.321 kb on + strandat 55.363 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.462 kb on - strand, within EX28DRAFT_4489at 55.462 kb on - strand, within EX28DRAFT_4489at 55.600 kb on + strand, within EX28DRAFT_4489at 55.600 kb on + strand, within EX28DRAFT_4489

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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51,753 - -3.5
51,753 - +0.7
51,768 + -1.7
51,769 - +0.4
51,773 - -0.3
51,773 - +0.7
51,773 - -0.5
51,773 - +0.5
51,780 + +0.1
51,821 + +1.1
51,821 + +0.1
51,866 + -0.9
51,986 + EX28DRAFT_4486 0.20 +0.4
51,987 - EX28DRAFT_4486 0.20 +0.5
51,987 - EX28DRAFT_4486 0.20 +0.5
51,995 + EX28DRAFT_4486 0.21 +0.6
51,996 - EX28DRAFT_4486 0.21 +0.5
51,996 - EX28DRAFT_4486 0.21 +0.9
52,030 - EX28DRAFT_4486 0.25 +0.3
52,037 + EX28DRAFT_4486 0.26 -0.1
52,038 - EX28DRAFT_4486 0.26 +0.5
52,211 + EX28DRAFT_4486 0.46 -0.3
52,212 - EX28DRAFT_4486 0.46 +0.7
52,212 - EX28DRAFT_4486 0.46 +0.2
52,212 - EX28DRAFT_4486 0.46 +0.1
52,291 + EX28DRAFT_4486 0.55 +0.4
52,346 + EX28DRAFT_4486 0.61 +0.0
52,347 - EX28DRAFT_4486 0.61 +0.1
52,442 + EX28DRAFT_4486 0.72 +0.6
52,443 - EX28DRAFT_4486 0.73 +2.2
52,443 - EX28DRAFT_4486 0.73 +0.3
52,443 - EX28DRAFT_4486 0.73 -0.0
52,443 - EX28DRAFT_4486 0.73 +0.0
52,445 - EX28DRAFT_4486 0.73 -0.4
52,445 - EX28DRAFT_4486 0.73 +0.4
52,445 - EX28DRAFT_4486 0.73 -1.7
52,454 + EX28DRAFT_4486 0.74 +0.3
52,511 + EX28DRAFT_4486 0.80 -0.3
52,512 - EX28DRAFT_4486 0.80 +0.1
52,551 + EX28DRAFT_4486 0.85 +0.2
52,557 - EX28DRAFT_4486 0.86 -1.0
52,584 - EX28DRAFT_4486 0.89 +0.7
52,585 + EX28DRAFT_4486 0.89 -0.4
52,586 - EX28DRAFT_4486 0.89 +0.5
52,586 - EX28DRAFT_4486 0.89 -0.8
52,595 + +0.8
52,596 - -1.3
52,625 + -1.2
52,672 + -0.2
52,789 - +0.5
52,941 - EX28DRAFT_4487 0.12 -0.2
53,129 + EX28DRAFT_4487 0.22 +0.4
53,129 + EX28DRAFT_4487 0.22 -0.3
53,129 + EX28DRAFT_4487 0.22 +0.1
53,129 + EX28DRAFT_4487 0.22 -1.2
53,130 - EX28DRAFT_4487 0.22 -0.4
53,130 - EX28DRAFT_4487 0.22 -0.5
53,130 - EX28DRAFT_4487 0.22 +0.3
53,130 - EX28DRAFT_4487 0.22 -0.2
53,221 + EX28DRAFT_4487 0.27 -2.2
53,221 + EX28DRAFT_4487 0.27 +0.3
53,222 - EX28DRAFT_4487 0.27 -0.0
53,255 + EX28DRAFT_4487 0.29 -1.0
53,375 + EX28DRAFT_4487 0.35 -0.6
53,375 + EX28DRAFT_4487 0.35 +0.8
53,375 + EX28DRAFT_4487 0.35 +0.9
53,375 + EX28DRAFT_4487 0.35 -2.5
53,378 - EX28DRAFT_4487 0.35 +0.3
53,415 - EX28DRAFT_4487 0.37 +0.2
53,416 + EX28DRAFT_4487 0.37 +0.1
53,416 + EX28DRAFT_4487 0.37 -3.4
53,416 + EX28DRAFT_4487 0.37 +0.3
53,417 - EX28DRAFT_4487 0.37 +0.3
53,417 - EX28DRAFT_4487 0.37 -0.0
53,417 - EX28DRAFT_4487 0.37 +1.0
53,417 - EX28DRAFT_4487 0.37 +1.1
53,417 - EX28DRAFT_4487 0.37 +1.1
53,417 - EX28DRAFT_4487 0.37 +0.3
53,459 + EX28DRAFT_4487 0.40 +1.6
53,496 - EX28DRAFT_4487 0.42 -0.3
53,733 - EX28DRAFT_4487 0.54 -0.7
53,999 + EX28DRAFT_4487 0.68 +0.0
54,041 + EX28DRAFT_4487 0.70 +3.3
54,072 - EX28DRAFT_4487 0.72 +0.3
54,362 + EX28DRAFT_4487 0.87 +2.8
54,363 - EX28DRAFT_4487 0.87 +0.2
54,599 + +1.0
54,644 - -0.2
54,658 + +0.3
54,668 - -0.5
54,668 - +0.5
54,673 + +0.0
54,674 - -0.9
54,674 - +0.4
54,875 + EX28DRAFT_4488 0.34 -0.2
54,876 - EX28DRAFT_4488 0.34 +2.3
54,884 + EX28DRAFT_4488 0.36 +1.5
54,903 + EX28DRAFT_4488 0.39 -1.3
54,904 - EX28DRAFT_4488 0.39 -0.1
55,010 - EX28DRAFT_4488 0.56 -0.4
55,053 + EX28DRAFT_4488 0.63 +0.2
55,053 + EX28DRAFT_4488 0.63 -1.0
55,053 + EX28DRAFT_4488 0.63 +0.5
55,053 + EX28DRAFT_4488 0.63 +1.1
55,054 - EX28DRAFT_4488 0.63 +0.3
55,155 - EX28DRAFT_4488 0.79 +0.4
55,321 + +0.1
55,363 + EX28DRAFT_4489 0.13 +0.4
55,461 + EX28DRAFT_4489 0.29 +0.4
55,461 + EX28DRAFT_4489 0.29 -1.1
55,461 + EX28DRAFT_4489 0.29 -0.2
55,462 - EX28DRAFT_4489 0.29 +0.7
55,462 - EX28DRAFT_4489 0.29 +0.4
55,600 + EX28DRAFT_4489 0.52 +0.1
55,600 + EX28DRAFT_4489 0.52 +0.7

Or see this region's nucleotide sequence