Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4475 and EX28DRAFT_4476 are separated by 95 nucleotides EX28DRAFT_4476 and EX28DRAFT_4477 are separated by 135 nucleotides EX28DRAFT_4477 and EX28DRAFT_4478 are separated by 35 nucleotides EX28DRAFT_4478 and EX28DRAFT_4479 overlap by 4 nucleotides EX28DRAFT_4479 and EX28DRAFT_4480 overlap by 4 nucleotides
EX28DRAFT_4475: EX28DRAFT_4475 - Adenylate cyclase, at 40,094 to 42,637
_4475
EX28DRAFT_4476: EX28DRAFT_4476 - iron donor protein CyaY, at 42,733 to 43,053
_4476
EX28DRAFT_4477: EX28DRAFT_4477 - Predicted small periplasmic lipoprotein, at 43,189 to 43,392
_4477
EX28DRAFT_4478: EX28DRAFT_4478 - diaminopimelate epimerase (EC 5.1.1.7), at 43,428 to 44,252
_4478
EX28DRAFT_4479: EX28DRAFT_4479 - Uncharacterized protein conserved in bacteria, at 44,249 to 44,956
_4479
EX28DRAFT_4480: EX28DRAFT_4480 - tyrosine recombinase XerC, at 44,953 to 45,855
_4480
Position (kb) 43
44
45 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 42.494 kb on - strand at 42.545 kb on - strand at 42.679 kb on + strand at 42.735 kb on - strand at 43.087 kb on - strand at 43.099 kb on - strand at 43.173 kb on + strand at 43.174 kb on - strand at 43.185 kb on + strand at 43.267 kb on + strand, within EX28DRAFT_4477 at 43.268 kb on - strand, within EX28DRAFT_4477 at 43.268 kb on - strand, within EX28DRAFT_4477 at 43.268 kb on - strand, within EX28DRAFT_4477 at 43.344 kb on + strand, within EX28DRAFT_4477 at 43.344 kb on + strand, within EX28DRAFT_4477 at 43.347 kb on + strand, within EX28DRAFT_4477 at 43.439 kb on + strand at 43.842 kb on + strand, within EX28DRAFT_4478 at 43.843 kb on - strand, within EX28DRAFT_4478 at 43.843 kb on - strand, within EX28DRAFT_4478 at 43.843 kb on - strand, within EX28DRAFT_4478 at 43.843 kb on - strand, within EX28DRAFT_4478 at 43.843 kb on - strand, within EX28DRAFT_4478 at 43.844 kb on + strand, within EX28DRAFT_4478 at 43.847 kb on + strand, within EX28DRAFT_4478 at 43.871 kb on - strand, within EX28DRAFT_4478 at 44.047 kb on - strand, within EX28DRAFT_4478 at 44.203 kb on - strand at 44.240 kb on + strand at 44.248 kb on + strand at 44.315 kb on + strand at 44.845 kb on - strand, within EX28DRAFT_4479 at 44.849 kb on - strand, within EX28DRAFT_4479
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 42,494 - +0.7 42,545 - -3.6 42,679 + -0.1 42,735 - -0.2 43,087 - +0.5 43,099 - +0.2 43,173 + +0.6 43,174 - -3.1 43,185 + +1.1 43,267 + EX28DRAFT_4477 0.38 -0.7 43,268 - EX28DRAFT_4477 0.39 -4.4 43,268 - EX28DRAFT_4477 0.39 -1.2 43,268 - EX28DRAFT_4477 0.39 -3.4 43,344 + EX28DRAFT_4477 0.76 -0.7 43,344 + EX28DRAFT_4477 0.76 +0.5 43,347 + EX28DRAFT_4477 0.77 +1.6 43,439 + -3.6 43,842 + EX28DRAFT_4478 0.50 -2.4 43,843 - EX28DRAFT_4478 0.50 -3.0 43,843 - EX28DRAFT_4478 0.50 -4.3 43,843 - EX28DRAFT_4478 0.50 -0.7 43,843 - EX28DRAFT_4478 0.50 -1.0 43,843 - EX28DRAFT_4478 0.50 -3.5 43,844 + EX28DRAFT_4478 0.50 -2.6 43,847 + EX28DRAFT_4478 0.51 -2.0 43,871 - EX28DRAFT_4478 0.54 -1.2 44,047 - EX28DRAFT_4478 0.75 -2.9 44,203 - -2.6 44,240 + -2.1 44,248 + -0.6 44,315 + +0.3 44,845 - EX28DRAFT_4479 0.84 -1.5 44,849 - EX28DRAFT_4479 0.85 +1.3
Or see this region's nucleotide sequence