Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4467

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4464 and EX28DRAFT_4465 are separated by 102 nucleotidesEX28DRAFT_4465 and EX28DRAFT_4466 are separated by 67 nucleotidesEX28DRAFT_4466 and EX28DRAFT_4467 are separated by 22 nucleotidesEX28DRAFT_4467 and EX28DRAFT_4468 are separated by 46 nucleotidesEX28DRAFT_4468 and EX28DRAFT_4469 are separated by 299 nucleotidesEX28DRAFT_4469 and EX28DRAFT_4470 are separated by 5 nucleotides EX28DRAFT_4464: EX28DRAFT_4464 - Gamma-aminobutyrate permease and related permeases, at 31,816 to 33,201 _4464 EX28DRAFT_4465: EX28DRAFT_4465 - tRNA, at 33,304 to 33,380 _4465 EX28DRAFT_4466: EX28DRAFT_4466 - tRNA, at 33,448 to 33,523 _4466 EX28DRAFT_4467: EX28DRAFT_4467 - tRNA, at 33,546 to 33,631 _4467 EX28DRAFT_4468: EX28DRAFT_4468 - tRNA, at 33,678 to 33,754 _4468 EX28DRAFT_4469: EX28DRAFT_4469 - RNA, at 34,054 to 34,256 _4469 EX28DRAFT_4470: EX28DRAFT_4470 - hypothetical protein, at 34,262 to 35,473 _4470 Position (kb) 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1at 32.712 kb on + strand, within EX28DRAFT_4464at 32.713 kb on - strand, within EX28DRAFT_4464at 32.725 kb on + strand, within EX28DRAFT_4464at 32.726 kb on - strand, within EX28DRAFT_4464at 32.726 kb on - strand, within EX28DRAFT_4464at 32.740 kb on - strand, within EX28DRAFT_4464at 32.747 kb on - strand, within EX28DRAFT_4464at 32.787 kb on + strand, within EX28DRAFT_4464at 32.899 kb on + strand, within EX28DRAFT_4464at 32.900 kb on - strand, within EX28DRAFT_4464at 32.900 kb on - strand, within EX28DRAFT_4464at 33.037 kb on + strand, within EX28DRAFT_4464at 33.037 kb on + strand, within EX28DRAFT_4464at 33.038 kb on - strand, within EX28DRAFT_4464at 33.069 kb on - strandat 33.085 kb on - strandat 33.148 kb on + strandat 33.150 kb on + strandat 33.150 kb on + strandat 33.151 kb on - strandat 33.151 kb on - strandat 33.151 kb on - strandat 33.525 kb on + strandat 33.587 kb on + strand, within EX28DRAFT_4467at 33.891 kb on - strandat 33.891 kb on - strandat 34.044 kb on + strandat 34.055 kb on + strandat 34.055 kb on + strandat 34.055 kb on + strandat 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.076 kb on - strand, within EX28DRAFT_4469at 34.076 kb on - strand, within EX28DRAFT_4469at 34.123 kb on + strand, within EX28DRAFT_4469at 34.203 kb on + strand, within EX28DRAFT_4469at 34.203 kb on + strand, within EX28DRAFT_4469at 34.204 kb on - strand, within EX28DRAFT_4469at 34.204 kb on - strand, within EX28DRAFT_4469at 34.240 kb on - strandat 34.323 kb on + strandat 34.323 kb on + strandat 34.323 kb on + strandat 34.323 kb on + strandat 34.324 kb on - strandat 34.324 kb on - strandat 34.324 kb on - strandat 34.324 kb on - strandat 34.325 kb on + strandat 34.334 kb on + strandat 34.529 kb on + strand, within EX28DRAFT_4470at 34.529 kb on + strand, within EX28DRAFT_4470at 34.529 kb on + strand, within EX28DRAFT_4470at 34.530 kb on - strand, within EX28DRAFT_4470at 34.596 kb on - strand, within EX28DRAFT_4470

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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32,712 + EX28DRAFT_4464 0.65 -0.9
32,713 - EX28DRAFT_4464 0.65 -0.3
32,725 + EX28DRAFT_4464 0.66 +1.2
32,726 - EX28DRAFT_4464 0.66 +0.4
32,726 - EX28DRAFT_4464 0.66 +0.0
32,740 - EX28DRAFT_4464 0.67 +1.3
32,747 - EX28DRAFT_4464 0.67 -0.1
32,787 + EX28DRAFT_4464 0.70 +0.4
32,899 + EX28DRAFT_4464 0.78 -0.2
32,900 - EX28DRAFT_4464 0.78 +0.0
32,900 - EX28DRAFT_4464 0.78 -0.7
33,037 + EX28DRAFT_4464 0.88 +0.4
33,037 + EX28DRAFT_4464 0.88 +0.6
33,038 - EX28DRAFT_4464 0.88 -0.4
33,069 - +0.5
33,085 - -2.8
33,148 + -0.9
33,150 + -0.0
33,150 + +0.2
33,151 - +0.1
33,151 - +0.0
33,151 - -0.0
33,525 + -0.1
33,587 + EX28DRAFT_4467 0.48 +0.5
33,891 - +0.4
33,891 - -1.2
34,044 + +0.4
34,055 + +0.4
34,055 + -1.3
34,055 + -0.2
34,075 + EX28DRAFT_4469 0.10 -0.2
34,075 + EX28DRAFT_4469 0.10 -0.2
34,075 + EX28DRAFT_4469 0.10 +0.3
34,075 + EX28DRAFT_4469 0.10 +0.2
34,075 + EX28DRAFT_4469 0.10 -0.2
34,076 - EX28DRAFT_4469 0.11 -0.8
34,076 - EX28DRAFT_4469 0.11 +0.8
34,123 + EX28DRAFT_4469 0.34 -0.6
34,203 + EX28DRAFT_4469 0.73 +0.1
34,203 + EX28DRAFT_4469 0.73 +0.5
34,204 - EX28DRAFT_4469 0.74 -0.9
34,204 - EX28DRAFT_4469 0.74 +0.9
34,240 - -0.3
34,323 + -0.7
34,323 + +0.7
34,323 + +0.1
34,323 + +0.6
34,324 - -0.1
34,324 - +0.4
34,324 - -0.3
34,324 - -0.6
34,325 + +1.3
34,334 + +0.3
34,529 + EX28DRAFT_4470 0.22 +0.6
34,529 + EX28DRAFT_4470 0.22 -0.7
34,529 + EX28DRAFT_4470 0.22 +0.3
34,530 - EX28DRAFT_4470 0.22 +0.1
34,596 - EX28DRAFT_4470 0.28 +0.4

Or see this region's nucleotide sequence