Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4464

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4462 and EX28DRAFT_4463 are separated by 12 nucleotidesEX28DRAFT_4463 and EX28DRAFT_4464 are separated by 197 nucleotidesEX28DRAFT_4464 and EX28DRAFT_4465 are separated by 102 nucleotidesEX28DRAFT_4465 and EX28DRAFT_4466 are separated by 67 nucleotidesEX28DRAFT_4466 and EX28DRAFT_4467 are separated by 22 nucleotidesEX28DRAFT_4467 and EX28DRAFT_4468 are separated by 46 nucleotidesEX28DRAFT_4468 and EX28DRAFT_4469 are separated by 299 nucleotides EX28DRAFT_4462: EX28DRAFT_4462 - WzyE protein, at 29,513 to 30,865 _4462 EX28DRAFT_4463: EX28DRAFT_4463 - Teichoic acid biosynthesis proteins, at 30,878 to 31,618 _4463 EX28DRAFT_4464: EX28DRAFT_4464 - Gamma-aminobutyrate permease and related permeases, at 31,816 to 33,201 _4464 EX28DRAFT_4465: EX28DRAFT_4465 - tRNA, at 33,304 to 33,380 _4465 EX28DRAFT_4466: EX28DRAFT_4466 - tRNA, at 33,448 to 33,523 _4466 EX28DRAFT_4467: EX28DRAFT_4467 - tRNA, at 33,546 to 33,631 _4467 EX28DRAFT_4468: EX28DRAFT_4468 - tRNA, at 33,678 to 33,754 _4468 EX28DRAFT_4469: EX28DRAFT_4469 - RNA, at 34,054 to 34,256 _4469 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 30.867 kb on + strandat 30.876 kb on + strandat 30.876 kb on + strandat 30.886 kb on + strandat 30.887 kb on - strandat 30.887 kb on - strandat 30.994 kb on + strand, within EX28DRAFT_4463at 31.083 kb on - strand, within EX28DRAFT_4463at 31.279 kb on + strand, within EX28DRAFT_4463at 31.442 kb on + strand, within EX28DRAFT_4463at 31.442 kb on + strand, within EX28DRAFT_4463at 31.442 kb on + strand, within EX28DRAFT_4463at 31.443 kb on - strand, within EX28DRAFT_4463at 31.443 kb on - strand, within EX28DRAFT_4463at 31.443 kb on - strand, within EX28DRAFT_4463at 31.463 kb on + strand, within EX28DRAFT_4463at 31.464 kb on - strand, within EX28DRAFT_4463at 31.641 kb on - strandat 31.675 kb on - strandat 31.754 kb on - strandat 31.754 kb on - strandat 31.754 kb on - strandat 31.783 kb on - strandat 31.838 kb on + strandat 31.838 kb on + strandat 31.874 kb on + strandat 31.960 kb on + strand, within EX28DRAFT_4464at 31.961 kb on - strand, within EX28DRAFT_4464at 31.961 kb on - strand, within EX28DRAFT_4464at 31.962 kb on + strand, within EX28DRAFT_4464at 31.963 kb on - strand, within EX28DRAFT_4464at 31.963 kb on - strand, within EX28DRAFT_4464at 32.062 kb on + strand, within EX28DRAFT_4464at 32.063 kb on - strand, within EX28DRAFT_4464at 32.064 kb on + strand, within EX28DRAFT_4464at 32.064 kb on + strand, within EX28DRAFT_4464at 32.064 kb on + strand, within EX28DRAFT_4464at 32.065 kb on - strand, within EX28DRAFT_4464at 32.065 kb on - strand, within EX28DRAFT_4464at 32.109 kb on + strand, within EX28DRAFT_4464at 32.109 kb on + strand, within EX28DRAFT_4464at 32.110 kb on - strand, within EX28DRAFT_4464at 32.156 kb on - strand, within EX28DRAFT_4464at 32.452 kb on + strand, within EX28DRAFT_4464at 32.475 kb on + strand, within EX28DRAFT_4464at 32.712 kb on + strand, within EX28DRAFT_4464at 32.713 kb on - strand, within EX28DRAFT_4464at 32.725 kb on + strand, within EX28DRAFT_4464at 32.726 kb on - strand, within EX28DRAFT_4464at 32.726 kb on - strand, within EX28DRAFT_4464at 32.740 kb on - strand, within EX28DRAFT_4464at 32.747 kb on - strand, within EX28DRAFT_4464at 32.787 kb on + strand, within EX28DRAFT_4464at 32.899 kb on + strand, within EX28DRAFT_4464at 32.900 kb on - strand, within EX28DRAFT_4464at 32.900 kb on - strand, within EX28DRAFT_4464at 33.037 kb on + strand, within EX28DRAFT_4464at 33.037 kb on + strand, within EX28DRAFT_4464at 33.038 kb on - strand, within EX28DRAFT_4464at 33.069 kb on - strandat 33.085 kb on - strandat 33.148 kb on + strandat 33.150 kb on + strandat 33.150 kb on + strandat 33.151 kb on - strandat 33.151 kb on - strandat 33.151 kb on - strandat 33.525 kb on + strandat 33.587 kb on + strand, within EX28DRAFT_4467at 33.891 kb on - strandat 33.891 kb on - strandat 34.044 kb on + strandat 34.055 kb on + strandat 34.055 kb on + strandat 34.055 kb on + strandat 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.075 kb on + strand, within EX28DRAFT_4469at 34.076 kb on - strand, within EX28DRAFT_4469at 34.076 kb on - strand, within EX28DRAFT_4469at 34.123 kb on + strand, within EX28DRAFT_4469

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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30,867 + +2.0
30,876 + -2.0
30,876 + -0.2
30,886 + +0.4
30,887 - +1.4
30,887 - -0.5
30,994 + EX28DRAFT_4463 0.16 +0.1
31,083 - EX28DRAFT_4463 0.28 +0.3
31,279 + EX28DRAFT_4463 0.54 -0.7
31,442 + EX28DRAFT_4463 0.76 +0.9
31,442 + EX28DRAFT_4463 0.76 +1.5
31,442 + EX28DRAFT_4463 0.76 +0.4
31,443 - EX28DRAFT_4463 0.76 +0.7
31,443 - EX28DRAFT_4463 0.76 -0.5
31,443 - EX28DRAFT_4463 0.76 +0.8
31,463 + EX28DRAFT_4463 0.79 +0.4
31,464 - EX28DRAFT_4463 0.79 +0.8
31,641 - -0.9
31,675 - -3.0
31,754 - -0.9
31,754 - +0.1
31,754 - -0.0
31,783 - +0.5
31,838 + +0.3
31,838 + -0.9
31,874 + -1.2
31,960 + EX28DRAFT_4464 0.10 +0.2
31,961 - EX28DRAFT_4464 0.10 +0.3
31,961 - EX28DRAFT_4464 0.10 +0.2
31,962 + EX28DRAFT_4464 0.11 +0.7
31,963 - EX28DRAFT_4464 0.11 -0.5
31,963 - EX28DRAFT_4464 0.11 +0.7
32,062 + EX28DRAFT_4464 0.18 +0.5
32,063 - EX28DRAFT_4464 0.18 -0.2
32,064 + EX28DRAFT_4464 0.18 +0.4
32,064 + EX28DRAFT_4464 0.18 +0.9
32,064 + EX28DRAFT_4464 0.18 -0.3
32,065 - EX28DRAFT_4464 0.18 +0.3
32,065 - EX28DRAFT_4464 0.18 -0.2
32,109 + EX28DRAFT_4464 0.21 -0.2
32,109 + EX28DRAFT_4464 0.21 +0.3
32,110 - EX28DRAFT_4464 0.21 +0.9
32,156 - EX28DRAFT_4464 0.25 +1.2
32,452 + EX28DRAFT_4464 0.46 +1.1
32,475 + EX28DRAFT_4464 0.48 -0.1
32,712 + EX28DRAFT_4464 0.65 -0.9
32,713 - EX28DRAFT_4464 0.65 -0.3
32,725 + EX28DRAFT_4464 0.66 +1.2
32,726 - EX28DRAFT_4464 0.66 +0.4
32,726 - EX28DRAFT_4464 0.66 +0.0
32,740 - EX28DRAFT_4464 0.67 +1.3
32,747 - EX28DRAFT_4464 0.67 -0.1
32,787 + EX28DRAFT_4464 0.70 +0.4
32,899 + EX28DRAFT_4464 0.78 -0.2
32,900 - EX28DRAFT_4464 0.78 +0.0
32,900 - EX28DRAFT_4464 0.78 -0.7
33,037 + EX28DRAFT_4464 0.88 +0.4
33,037 + EX28DRAFT_4464 0.88 +0.6
33,038 - EX28DRAFT_4464 0.88 -0.4
33,069 - +0.5
33,085 - -2.8
33,148 + -0.9
33,150 + -0.0
33,150 + +0.2
33,151 - +0.1
33,151 - +0.0
33,151 - -0.0
33,525 + -0.1
33,587 + EX28DRAFT_4467 0.48 +0.5
33,891 - +0.4
33,891 - -1.2
34,044 + +0.4
34,055 + +0.4
34,055 + -1.3
34,055 + -0.2
34,075 + EX28DRAFT_4469 0.10 -0.2
34,075 + EX28DRAFT_4469 0.10 -0.2
34,075 + EX28DRAFT_4469 0.10 +0.3
34,075 + EX28DRAFT_4469 0.10 +0.2
34,075 + EX28DRAFT_4469 0.10 -0.2
34,076 - EX28DRAFT_4469 0.11 -0.8
34,076 - EX28DRAFT_4469 0.11 +0.8
34,123 + EX28DRAFT_4469 0.34 -0.6

Or see this region's nucleotide sequence