Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4456 and EX28DRAFT_4457 overlap by 4 nucleotides EX28DRAFT_4457 and EX28DRAFT_4458 overlap by 4 nucleotides EX28DRAFT_4458 and EX28DRAFT_4459 are separated by 4 nucleotides
EX28DRAFT_4456: EX28DRAFT_4456 - UDP-N-acetylglucosamine 2-epimerase, at 22,984 to 24,120
_4456
EX28DRAFT_4457: EX28DRAFT_4457 - nucleotide sugar dehydrogenase, at 24,117 to 25,379
_4457
EX28DRAFT_4458: EX28DRAFT_4458 - TDP-D-fucosamine acetyltransferase, at 25,376 to 26,053
_4458
EX28DRAFT_4459: EX28DRAFT_4459 - TDP-4-keto-6-deoxy-D-glucose transaminase, at 26,058 to 27,188
_4459
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1 at 23.155 kb on + strand, within EX28DRAFT_4456 at 23.163 kb on + strand, within EX28DRAFT_4456 at 23.164 kb on - strand, within EX28DRAFT_4456 at 23.166 kb on + strand, within EX28DRAFT_4456 at 23.167 kb on - strand, within EX28DRAFT_4456 at 23.167 kb on - strand, within EX28DRAFT_4456 at 23.265 kb on - strand, within EX28DRAFT_4456 at 23.503 kb on - strand, within EX28DRAFT_4456 at 23.806 kb on + strand, within EX28DRAFT_4456 at 24.049 kb on - strand at 24.096 kb on + strand at 24.153 kb on + strand at 24.154 kb on - strand at 24.154 kb on - strand at 24.233 kb on - strand at 24.535 kb on + strand, within EX28DRAFT_4457 at 24.535 kb on + strand, within EX28DRAFT_4457 at 24.849 kb on - strand, within EX28DRAFT_4457 at 25.025 kb on + strand, within EX28DRAFT_4457 at 25.297 kb on + strand at 25.347 kb on + strand at 25.347 kb on + strand at 25.348 kb on - strand at 25.349 kb on + strand at 25.350 kb on - strand at 26.046 kb on - strand at 26.103 kb on + strand at 26.103 kb on + strand at 26.104 kb on - strand at 26.105 kb on + strand at 26.106 kb on - strand at 26.106 kb on - strand at 26.293 kb on - strand, within EX28DRAFT_4459 at 26.295 kb on - strand, within EX28DRAFT_4459 at 26.295 kb on - strand, within EX28DRAFT_4459 at 26.295 kb on - strand, within EX28DRAFT_4459
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 23,155 + EX28DRAFT_4456 0.15 +0.6 23,163 + EX28DRAFT_4456 0.16 +0.2 23,164 - EX28DRAFT_4456 0.16 +0.3 23,166 + EX28DRAFT_4456 0.16 +0.6 23,167 - EX28DRAFT_4456 0.16 +1.0 23,167 - EX28DRAFT_4456 0.16 -0.3 23,265 - EX28DRAFT_4456 0.25 -0.1 23,503 - EX28DRAFT_4456 0.46 +0.8 23,806 + EX28DRAFT_4456 0.72 +0.2 24,049 - +0.8 24,096 + +0.2 24,153 + +0.3 24,154 - +0.7 24,154 - +0.8 24,233 - +0.2 24,535 + EX28DRAFT_4457 0.33 +1.7 24,535 + EX28DRAFT_4457 0.33 +0.5 24,849 - EX28DRAFT_4457 0.58 +1.0 25,025 + EX28DRAFT_4457 0.72 +0.2 25,297 + +0.9 25,347 + +1.1 25,347 + -0.2 25,348 - +0.5 25,349 + +0.4 25,350 - +0.8 26,046 - -0.1 26,103 + +0.3 26,103 + +0.3 26,104 - -0.3 26,105 + +0.4 26,106 - +0.5 26,106 - -1.0 26,293 - EX28DRAFT_4459 0.21 -1.7 26,295 - EX28DRAFT_4459 0.21 -1.7 26,295 - EX28DRAFT_4459 0.21 -0.5 26,295 - EX28DRAFT_4459 0.21 +0.1
Or see this region's nucleotide sequence