Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4446 and EX28DRAFT_4447 are separated by 93 nucleotides EX28DRAFT_4447 and EX28DRAFT_4448 are separated by 50 nucleotides EX28DRAFT_4448 and EX28DRAFT_4449 are separated by 112 nucleotides
EX28DRAFT_4446: EX28DRAFT_4446 - ketol-acid reductoisomerase (EC 1.1.1.86), at 11,311 to 12,786
_4446
EX28DRAFT_4447: EX28DRAFT_4447 - PPIC-type PPIASE domain, at 12,880 to 13,161
_4447
EX28DRAFT_4448: EX28DRAFT_4448 - PPIC-type PPIASE domain, at 13,212 to 13,493
_4448
EX28DRAFT_4449: EX28DRAFT_4449 - ATP-dependent DNA helicase Rep (EC 3.6.1.-), at 13,606 to 15,630
_4449
Position (kb) 13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.343 kb on + strand, within EX28DRAFT_4446 at 12.387 kb on - strand, within EX28DRAFT_4446 at 12.387 kb on - strand, within EX28DRAFT_4446 at 12.473 kb on - strand, within EX28DRAFT_4446 at 12.570 kb on + strand, within EX28DRAFT_4446 at 12.574 kb on + strand, within EX28DRAFT_4446 at 12.575 kb on - strand, within EX28DRAFT_4446 at 12.615 kb on + strand, within EX28DRAFT_4446 at 12.616 kb on - strand, within EX28DRAFT_4446 at 12.616 kb on - strand, within EX28DRAFT_4446 at 12.848 kb on + strand at 12.881 kb on + strand at 12.881 kb on + strand at 12.882 kb on - strand at 12.882 kb on - strand at 12.896 kb on - strand at 12.904 kb on - strand at 12.904 kb on - strand at 13.044 kb on + strand, within EX28DRAFT_4447 at 13.044 kb on + strand, within EX28DRAFT_4447 at 13.045 kb on - strand, within EX28DRAFT_4447 at 13.105 kb on + strand, within EX28DRAFT_4447 at 13.105 kb on + strand, within EX28DRAFT_4447 at 13.106 kb on - strand, within EX28DRAFT_4447 at 13.176 kb on + strand at 13.176 kb on + strand at 13.177 kb on - strand at 13.201 kb on + strand at 13.202 kb on - strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.204 kb on - strand at 13.233 kb on - strand at 13.238 kb on + strand at 13.239 kb on - strand at 13.293 kb on - strand, within EX28DRAFT_4448 at 13.377 kb on - strand, within EX28DRAFT_4448 at 13.466 kb on + strand at 13.467 kb on - strand at 13.467 kb on - strand at 13.531 kb on + strand at 13.531 kb on + strand at 13.532 kb on - strand at 13.568 kb on - strand at 13.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 12,343 + EX28DRAFT_4446 0.70 +0.5 12,387 - EX28DRAFT_4446 0.73 -3.0 12,387 - EX28DRAFT_4446 0.73 -0.8 12,473 - EX28DRAFT_4446 0.79 -2.5 12,570 + EX28DRAFT_4446 0.85 +0.8 12,574 + EX28DRAFT_4446 0.86 -0.3 12,575 - EX28DRAFT_4446 0.86 -1.3 12,615 + EX28DRAFT_4446 0.88 -1.1 12,616 - EX28DRAFT_4446 0.88 -0.5 12,616 - EX28DRAFT_4446 0.88 -2.6 12,848 + +0.1 12,881 + -0.4 12,881 + +0.1 12,882 - -1.2 12,882 - +0.4 12,896 - -0.5 12,904 - +0.5 12,904 - +0.4 13,044 + EX28DRAFT_4447 0.58 +0.2 13,044 + EX28DRAFT_4447 0.58 -0.0 13,045 - EX28DRAFT_4447 0.59 -0.3 13,105 + EX28DRAFT_4447 0.80 -2.2 13,105 + EX28DRAFT_4447 0.80 -0.7 13,106 - EX28DRAFT_4447 0.80 -0.2 13,176 + +0.4 13,176 + +0.4 13,177 - -0.8 13,201 + -0.9 13,202 - -0.1 13,203 + -1.6 13,203 + +0.3 13,203 + +1.0 13,204 - +0.4 13,233 - +0.3 13,238 + +0.5 13,239 - -0.4 13,293 - EX28DRAFT_4448 0.29 +0.6 13,377 - EX28DRAFT_4448 0.59 +0.2 13,466 + +0.4 13,467 - +0.5 13,467 - +0.2 13,531 + -0.4 13,531 + +0.7 13,532 - -1.0 13,568 - +0.3 13,613 + -0.7
Or see this region's nucleotide sequence