Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4438 and EX28DRAFT_4439 are separated by 65 nucleotides EX28DRAFT_4439 and EX28DRAFT_4440 are separated by 385 nucleotides EX28DRAFT_4440 and EX28DRAFT_4441 overlap by 4 nucleotides EX28DRAFT_4441 and EX28DRAFT_4442 are separated by 18 nucleotides
EX28DRAFT_4438: EX28DRAFT_4438 - Mg chelatase-related protein, at 1,811 to 3,331
_4438
EX28DRAFT_4439: EX28DRAFT_4439 - hypothetical protein, at 3,397 to 3,525
_4439
EX28DRAFT_4440: EX28DRAFT_4440 - acetolactate synthase, large subunit (EC 2.2.1.6), at 3,911 to 5,557
_4440
EX28DRAFT_4441: EX28DRAFT_4441 - acetolactate synthase, small subunit (EC 2.2.1.6), at 5,554 to 5,817
_4441
EX28DRAFT_4442: EX28DRAFT_4442 - branched-chain amino acid aminotransferase, group I, at 5,836 to 6,765
_4442
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 2.943 kb on - strand, within EX28DRAFT_4438 at 3.041 kb on - strand, within EX28DRAFT_4438 at 3.084 kb on - strand, within EX28DRAFT_4438 at 3.158 kb on - strand, within EX28DRAFT_4438 at 3.158 kb on - strand, within EX28DRAFT_4438 at 3.159 kb on + strand, within EX28DRAFT_4438 at 3.166 kb on + strand, within EX28DRAFT_4438 at 3.170 kb on + strand, within EX28DRAFT_4438 at 3.170 kb on + strand, within EX28DRAFT_4438 at 3.171 kb on - strand, within EX28DRAFT_4438 at 3.171 kb on - strand, within EX28DRAFT_4438 at 3.171 kb on - strand, within EX28DRAFT_4438 at 3.253 kb on + strand at 3.258 kb on - strand at 3.258 kb on - strand at 3.492 kb on + strand, within EX28DRAFT_4439 at 3.541 kb on + strand at 3.593 kb on + strand at 3.593 kb on + strand at 3.594 kb on - strand at 3.639 kb on + strand at 3.687 kb on - strand at 3.730 kb on - strand at 3.826 kb on + strand at 3.931 kb on - strand at 3.933 kb on + strand at 3.933 kb on + strand at 3.934 kb on - strand at 3.934 kb on - strand at 3.991 kb on + strand at 4.002 kb on - strand at 4.014 kb on - strand at 4.079 kb on + strand, within EX28DRAFT_4440 at 4.080 kb on - strand, within EX28DRAFT_4440 at 4.390 kb on + strand, within EX28DRAFT_4440 at 4.391 kb on - strand, within EX28DRAFT_4440 at 4.640 kb on + strand, within EX28DRAFT_4440 at 4.641 kb on - strand, within EX28DRAFT_4440 at 4.641 kb on - strand, within EX28DRAFT_4440 at 4.641 kb on - strand, within EX28DRAFT_4440 at 4.786 kb on + strand, within EX28DRAFT_4440 at 4.787 kb on - strand, within EX28DRAFT_4440 at 4.787 kb on - strand, within EX28DRAFT_4440 at 4.967 kb on + strand, within EX28DRAFT_4440 at 4.968 kb on - strand, within EX28DRAFT_4440 at 5.002 kb on + strand, within EX28DRAFT_4440 at 5.003 kb on - strand, within EX28DRAFT_4440 at 5.003 kb on - strand, within EX28DRAFT_4440 at 5.035 kb on - strand, within EX28DRAFT_4440 at 5.072 kb on + strand, within EX28DRAFT_4440 at 5.073 kb on - strand, within EX28DRAFT_4440 at 5.183 kb on - strand, within EX28DRAFT_4440 at 5.550 kb on + strand at 5.550 kb on + strand at 5.652 kb on + strand, within EX28DRAFT_4441 at 5.653 kb on - strand, within EX28DRAFT_4441 at 5.700 kb on - strand, within EX28DRAFT_4441 at 5.730 kb on - strand, within EX28DRAFT_4441 at 5.736 kb on + strand, within EX28DRAFT_4441 at 5.757 kb on - strand, within EX28DRAFT_4441 at 5.857 kb on + strand at 5.858 kb on - strand at 5.929 kb on + strand, within EX28DRAFT_4442 at 5.929 kb on + strand, within EX28DRAFT_4442 at 5.930 kb on - strand, within EX28DRAFT_4442 at 5.935 kb on - strand, within EX28DRAFT_4442 at 5.942 kb on + strand, within EX28DRAFT_4442 at 5.943 kb on - strand, within EX28DRAFT_4442 at 5.943 kb on - strand, within EX28DRAFT_4442 at 5.962 kb on + strand, within EX28DRAFT_4442 at 5.963 kb on - strand, within EX28DRAFT_4442 at 6.182 kb on - strand, within EX28DRAFT_4442 at 6.184 kb on - strand, within EX28DRAFT_4442 at 6.329 kb on - strand, within EX28DRAFT_4442 at 6.407 kb on - strand, within EX28DRAFT_4442 at 6.407 kb on - strand, within EX28DRAFT_4442 at 6.407 kb on - strand, within EX28DRAFT_4442 at 6.453 kb on + strand, within EX28DRAFT_4442 at 6.546 kb on - strand, within EX28DRAFT_4442 at 6.546 kb on - strand, within EX28DRAFT_4442
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,943 - EX28DRAFT_4438 0.74 -0.5 3,041 - EX28DRAFT_4438 0.81 -3.2 3,084 - EX28DRAFT_4438 0.84 +0.0 3,158 - EX28DRAFT_4438 0.89 +1.8 3,158 - EX28DRAFT_4438 0.89 +1.8 3,159 + EX28DRAFT_4438 0.89 +0.4 3,166 + EX28DRAFT_4438 0.89 +0.3 3,170 + EX28DRAFT_4438 0.89 -0.3 3,170 + EX28DRAFT_4438 0.89 +0.2 3,171 - EX28DRAFT_4438 0.89 +0.2 3,171 - EX28DRAFT_4438 0.89 +0.0 3,171 - EX28DRAFT_4438 0.89 -0.2 3,253 + +0.0 3,258 - -1.0 3,258 - -0.6 3,492 + EX28DRAFT_4439 0.74 +0.5 3,541 + +0.3 3,593 + -0.6 3,593 + +0.1 3,594 - +0.7 3,639 + -0.4 3,687 - -1.8 3,730 - -4.8 3,826 + +0.2 3,931 - -1.2 3,933 + -2.4 3,933 + -1.1 3,934 - -2.6 3,934 - -3.2 3,991 + -1.8 4,002 - -2.4 4,014 - -3.0 4,079 + EX28DRAFT_4440 0.10 -1.6 4,080 - EX28DRAFT_4440 0.10 +0.9 4,390 + EX28DRAFT_4440 0.29 -2.0 4,391 - EX28DRAFT_4440 0.29 -2.0 4,640 + EX28DRAFT_4440 0.44 +0.3 4,641 - EX28DRAFT_4440 0.44 +3.5 4,641 - EX28DRAFT_4440 0.44 -3.3 4,641 - EX28DRAFT_4440 0.44 -2.0 4,786 + EX28DRAFT_4440 0.53 -1.8 4,787 - EX28DRAFT_4440 0.53 -3.7 4,787 - EX28DRAFT_4440 0.53 -1.1 4,967 + EX28DRAFT_4440 0.64 -2.5 4,968 - EX28DRAFT_4440 0.64 -2.5 5,002 + EX28DRAFT_4440 0.66 -2.1 5,003 - EX28DRAFT_4440 0.66 -2.5 5,003 - EX28DRAFT_4440 0.66 -1.4 5,035 - EX28DRAFT_4440 0.68 -0.3 5,072 + EX28DRAFT_4440 0.70 -1.2 5,073 - EX28DRAFT_4440 0.71 -2.4 5,183 - EX28DRAFT_4440 0.77 -4.3 5,550 + -1.8 5,550 + -0.6 5,652 + EX28DRAFT_4441 0.37 +0.3 5,653 - EX28DRAFT_4441 0.38 -1.0 5,700 - EX28DRAFT_4441 0.55 +0.9 5,730 - EX28DRAFT_4441 0.67 +0.2 5,736 + EX28DRAFT_4441 0.69 -0.4 5,757 - EX28DRAFT_4441 0.77 -1.4 5,857 + -3.1 5,858 - -1.3 5,929 + EX28DRAFT_4442 0.10 +0.6 5,929 + EX28DRAFT_4442 0.10 -1.6 5,930 - EX28DRAFT_4442 0.10 -1.2 5,935 - EX28DRAFT_4442 0.11 -1.2 5,942 + EX28DRAFT_4442 0.11 +1.0 5,943 - EX28DRAFT_4442 0.12 -2.3 5,943 - EX28DRAFT_4442 0.12 -5.5 5,962 + EX28DRAFT_4442 0.14 -1.6 5,963 - EX28DRAFT_4442 0.14 -3.7 6,182 - EX28DRAFT_4442 0.37 -2.5 6,184 - EX28DRAFT_4442 0.37 -0.3 6,329 - EX28DRAFT_4442 0.53 -1.9 6,407 - EX28DRAFT_4442 0.61 -2.1 6,407 - EX28DRAFT_4442 0.61 -1.6 6,407 - EX28DRAFT_4442 0.61 -3.2 6,453 + EX28DRAFT_4442 0.66 -1.7 6,546 - EX28DRAFT_4442 0.76 -2.2 6,546 - EX28DRAFT_4442 0.76 -2.6
Or see this region's nucleotide sequence