Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4419

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4418 and EX28DRAFT_4419 are separated by 271 nucleotidesEX28DRAFT_4419 and EX28DRAFT_4420 are separated by 88 nucleotides EX28DRAFT_4418: EX28DRAFT_4418 - Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31), at 83,546 to 86,197 _4418 EX28DRAFT_4419: EX28DRAFT_4419 - acetylornithine deacetylase (ArgE), at 86,469 to 87,620 _4419 EX28DRAFT_4420: EX28DRAFT_4420 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 87,709 to 88,713 _4420 Position (kb) 86 87 88Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 85.540 kb on - strand, within EX28DRAFT_4418at 85.543 kb on + strand, within EX28DRAFT_4418at 85.544 kb on - strand, within EX28DRAFT_4418at 85.544 kb on - strand, within EX28DRAFT_4418at 86.167 kb on + strandat 86.170 kb on + strandat 86.198 kb on - strandat 86.276 kb on - strandat 86.285 kb on + strandat 86.332 kb on - strandat 86.332 kb on - strandat 86.374 kb on + strandat 86.471 kb on - strandat 86.632 kb on + strand, within EX28DRAFT_4419at 86.633 kb on - strand, within EX28DRAFT_4419at 87.163 kb on + strand, within EX28DRAFT_4419at 87.211 kb on + strand, within EX28DRAFT_4419at 87.634 kb on + strandat 87.634 kb on + strandat 87.634 kb on + strandat 87.634 kb on + strandat 87.634 kb on + strandat 87.635 kb on - strandat 87.635 kb on - strandat 87.635 kb on - strandat 87.635 kb on - strandat 87.645 kb on - strandat 87.647 kb on + strandat 87.654 kb on - strandat 87.697 kb on + strandat 87.697 kb on + strandat 87.697 kb on + strandat 87.698 kb on - strandat 87.698 kb on - strandat 87.718 kb on - strandat 87.761 kb on + strandat 87.762 kb on - strandat 87.766 kb on + strandat 87.786 kb on + strandat 87.787 kb on - strandat 87.787 kb on - strandat 88.132 kb on - strand, within EX28DRAFT_4420at 88.327 kb on + strand, within EX28DRAFT_4420

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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85,540 - EX28DRAFT_4418 0.75 -2.2
85,543 + EX28DRAFT_4418 0.75 -2.4
85,544 - EX28DRAFT_4418 0.75 -3.5
85,544 - EX28DRAFT_4418 0.75 -0.3
86,167 + -2.2
86,170 + -5.1
86,198 - -3.6
86,276 - +0.9
86,285 + -4.1
86,332 - -0.2
86,332 - -0.0
86,374 + +1.2
86,471 - -0.9
86,632 + EX28DRAFT_4419 0.14 -1.1
86,633 - EX28DRAFT_4419 0.14 -2.1
87,163 + EX28DRAFT_4419 0.60 -0.9
87,211 + EX28DRAFT_4419 0.64 +1.2
87,634 + -2.1
87,634 + -0.8
87,634 + -1.7
87,634 + -0.9
87,634 + -1.3
87,635 - -1.2
87,635 - -0.5
87,635 - -4.2
87,635 - -3.0
87,645 - +1.4
87,647 + -1.4
87,654 - -0.7
87,697 + -0.8
87,697 + -4.4
87,697 + +0.4
87,698 - -2.8
87,698 - -2.5
87,718 - -2.8
87,761 + -1.8
87,762 - -2.5
87,766 + -2.9
87,786 + -0.4
87,787 - -2.3
87,787 - +2.4
88,132 - EX28DRAFT_4420 0.42 +2.4
88,327 + EX28DRAFT_4420 0.61 -1.8

Or see this region's nucleotide sequence