Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4418 and EX28DRAFT_4419 are separated by 271 nucleotides EX28DRAFT_4419 and EX28DRAFT_4420 are separated by 88 nucleotides
EX28DRAFT_4418: EX28DRAFT_4418 - Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31), at 83,546 to 86,197
_4418
EX28DRAFT_4419: EX28DRAFT_4419 - acetylornithine deacetylase (ArgE), at 86,469 to 87,620
_4419
EX28DRAFT_4420: EX28DRAFT_4420 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 87,709 to 88,713
_4420
Position (kb)
86
87
88 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 85.540 kb on - strand, within EX28DRAFT_4418 at 85.543 kb on + strand, within EX28DRAFT_4418 at 85.544 kb on - strand, within EX28DRAFT_4418 at 85.544 kb on - strand, within EX28DRAFT_4418 at 86.167 kb on + strand at 86.170 kb on + strand at 86.198 kb on - strand at 86.276 kb on - strand at 86.285 kb on + strand at 86.332 kb on - strand at 86.332 kb on - strand at 86.374 kb on + strand at 86.471 kb on - strand at 86.632 kb on + strand, within EX28DRAFT_4419 at 86.633 kb on - strand, within EX28DRAFT_4419 at 87.163 kb on + strand, within EX28DRAFT_4419 at 87.211 kb on + strand, within EX28DRAFT_4419 at 87.634 kb on + strand at 87.634 kb on + strand at 87.634 kb on + strand at 87.634 kb on + strand at 87.634 kb on + strand at 87.635 kb on - strand at 87.635 kb on - strand at 87.635 kb on - strand at 87.635 kb on - strand at 87.645 kb on - strand at 87.647 kb on + strand at 87.654 kb on - strand at 87.697 kb on + strand at 87.697 kb on + strand at 87.697 kb on + strand at 87.698 kb on - strand at 87.698 kb on - strand at 87.718 kb on - strand at 87.761 kb on + strand at 87.762 kb on - strand at 87.766 kb on + strand at 87.786 kb on + strand at 87.787 kb on - strand at 87.787 kb on - strand at 88.132 kb on - strand, within EX28DRAFT_4420 at 88.327 kb on + strand, within EX28DRAFT_4420
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 85,540 - EX28DRAFT_4418 0.75 -2.2 85,543 + EX28DRAFT_4418 0.75 -2.4 85,544 - EX28DRAFT_4418 0.75 -3.5 85,544 - EX28DRAFT_4418 0.75 -0.3 86,167 + -2.2 86,170 + -5.1 86,198 - -3.6 86,276 - +0.9 86,285 + -4.1 86,332 - -0.2 86,332 - -0.0 86,374 + +1.2 86,471 - -0.9 86,632 + EX28DRAFT_4419 0.14 -1.1 86,633 - EX28DRAFT_4419 0.14 -2.1 87,163 + EX28DRAFT_4419 0.60 -0.9 87,211 + EX28DRAFT_4419 0.64 +1.2 87,634 + -2.1 87,634 + -0.8 87,634 + -1.7 87,634 + -0.9 87,634 + -1.3 87,635 - -1.2 87,635 - -0.5 87,635 - -4.2 87,635 - -3.0 87,645 - +1.4 87,647 + -1.4 87,654 - -0.7 87,697 + -0.8 87,697 + -4.4 87,697 + +0.4 87,698 - -2.8 87,698 - -2.5 87,718 - -2.8 87,761 + -1.8 87,762 - -2.5 87,766 + -2.9 87,786 + -0.4 87,787 - -2.3 87,787 - +2.4 88,132 - EX28DRAFT_4420 0.42 +2.4 88,327 + EX28DRAFT_4420 0.61 -1.8
Or see this region's nucleotide sequence