Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4416 and EX28DRAFT_4417 are separated by 128 nucleotides EX28DRAFT_4417 and EX28DRAFT_4418 are separated by 93 nucleotides EX28DRAFT_4418 and EX28DRAFT_4419 are separated by 271 nucleotides
EX28DRAFT_4416: EX28DRAFT_4416 - fructose-6-phosphate aldolase, TalC/MipB family, at 81,897 to 82,559
_4416
EX28DRAFT_4417: EX28DRAFT_4417 - Helix-turn-helix domain, at 82,688 to 83,452
_4417
EX28DRAFT_4418: EX28DRAFT_4418 - Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31), at 83,546 to 86,197
_4418
EX28DRAFT_4419: EX28DRAFT_4419 - acetylornithine deacetylase (ArgE), at 86,469 to 87,620
_4419
Position (kb) 83
84
85
86
87 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 82.571 kb on - strand at 82.589 kb on - strand at 82.595 kb on + strand at 82.596 kb on - strand at 82.728 kb on + strand at 82.776 kb on + strand, within EX28DRAFT_4417 at 82.776 kb on + strand, within EX28DRAFT_4417 at 82.777 kb on - strand, within EX28DRAFT_4417 at 82.777 kb on - strand, within EX28DRAFT_4417 at 82.789 kb on + strand, within EX28DRAFT_4417 at 82.823 kb on - strand, within EX28DRAFT_4417 at 82.823 kb on - strand, within EX28DRAFT_4417 at 82.831 kb on - strand, within EX28DRAFT_4417 at 82.878 kb on + strand, within EX28DRAFT_4417 at 82.927 kb on - strand, within EX28DRAFT_4417 at 82.941 kb on + strand, within EX28DRAFT_4417 at 83.091 kb on - strand, within EX28DRAFT_4417 at 83.132 kb on + strand, within EX28DRAFT_4417 at 83.132 kb on + strand, within EX28DRAFT_4417 at 83.133 kb on - strand, within EX28DRAFT_4417 at 83.133 kb on - strand, within EX28DRAFT_4417 at 83.209 kb on + strand, within EX28DRAFT_4417 at 83.210 kb on - strand, within EX28DRAFT_4417 at 83.210 kb on - strand, within EX28DRAFT_4417 at 83.222 kb on + strand, within EX28DRAFT_4417 at 83.255 kb on + strand, within EX28DRAFT_4417 at 83.255 kb on + strand, within EX28DRAFT_4417 at 83.255 kb on + strand, within EX28DRAFT_4417 at 83.255 kb on + strand, within EX28DRAFT_4417 at 83.256 kb on - strand, within EX28DRAFT_4417 at 83.256 kb on - strand, within EX28DRAFT_4417 at 83.256 kb on - strand, within EX28DRAFT_4417 at 83.256 kb on - strand, within EX28DRAFT_4417 at 83.307 kb on - strand, within EX28DRAFT_4417 at 83.361 kb on + strand, within EX28DRAFT_4417 at 83.362 kb on - strand, within EX28DRAFT_4417 at 83.441 kb on - strand at 83.508 kb on + strand at 83.509 kb on - strand at 83.509 kb on - strand at 83.544 kb on + strand at 83.544 kb on + strand at 83.545 kb on - strand at 83.558 kb on - strand at 83.626 kb on + strand at 83.626 kb on + strand at 83.695 kb on - strand at 83.853 kb on + strand, within EX28DRAFT_4418 at 84.072 kb on - strand, within EX28DRAFT_4418 at 84.211 kb on + strand, within EX28DRAFT_4418 at 84.336 kb on + strand, within EX28DRAFT_4418 at 84.607 kb on + strand, within EX28DRAFT_4418 at 84.784 kb on - strand, within EX28DRAFT_4418 at 85.014 kb on - strand, within EX28DRAFT_4418 at 85.014 kb on - strand, within EX28DRAFT_4418 at 85.118 kb on - strand, within EX28DRAFT_4418 at 85.118 kb on - strand, within EX28DRAFT_4418 at 85.540 kb on - strand, within EX28DRAFT_4418 at 85.543 kb on + strand, within EX28DRAFT_4418 at 85.544 kb on - strand, within EX28DRAFT_4418 at 85.544 kb on - strand, within EX28DRAFT_4418 at 86.167 kb on + strand at 86.170 kb on + strand at 86.198 kb on - strand at 86.276 kb on - strand at 86.285 kb on + strand at 86.332 kb on - strand at 86.332 kb on - strand at 86.374 kb on + strand at 86.471 kb on - strand at 86.632 kb on + strand, within EX28DRAFT_4419 at 86.633 kb on - strand, within EX28DRAFT_4419 at 87.163 kb on + strand, within EX28DRAFT_4419
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 82,571 - -0.0 82,589 - -0.2 82,595 + -0.3 82,596 - -0.3 82,728 + +0.4 82,776 + EX28DRAFT_4417 0.12 -1.3 82,776 + EX28DRAFT_4417 0.12 +0.3 82,777 - EX28DRAFT_4417 0.12 +0.3 82,777 - EX28DRAFT_4417 0.12 +0.3 82,789 + EX28DRAFT_4417 0.13 +1.6 82,823 - EX28DRAFT_4417 0.18 -0.5 82,823 - EX28DRAFT_4417 0.18 +1.9 82,831 - EX28DRAFT_4417 0.19 -1.4 82,878 + EX28DRAFT_4417 0.25 +0.3 82,927 - EX28DRAFT_4417 0.31 +0.3 82,941 + EX28DRAFT_4417 0.33 +0.1 83,091 - EX28DRAFT_4417 0.53 -1.2 83,132 + EX28DRAFT_4417 0.58 +0.4 83,132 + EX28DRAFT_4417 0.58 -0.3 83,133 - EX28DRAFT_4417 0.58 +0.0 83,133 - EX28DRAFT_4417 0.58 +0.0 83,209 + EX28DRAFT_4417 0.68 +0.7 83,210 - EX28DRAFT_4417 0.68 -0.2 83,210 - EX28DRAFT_4417 0.68 +0.4 83,222 + EX28DRAFT_4417 0.70 -0.4 83,255 + EX28DRAFT_4417 0.74 +2.3 83,255 + EX28DRAFT_4417 0.74 +0.3 83,255 + EX28DRAFT_4417 0.74 -0.4 83,255 + EX28DRAFT_4417 0.74 +0.3 83,256 - EX28DRAFT_4417 0.74 -1.0 83,256 - EX28DRAFT_4417 0.74 -0.4 83,256 - EX28DRAFT_4417 0.74 +0.0 83,256 - EX28DRAFT_4417 0.74 -0.2 83,307 - EX28DRAFT_4417 0.81 -0.4 83,361 + EX28DRAFT_4417 0.88 -2.1 83,362 - EX28DRAFT_4417 0.88 +0.0 83,441 - +0.1 83,508 + -1.8 83,509 - +0.6 83,509 - -0.5 83,544 + +0.7 83,544 + -0.5 83,545 - +0.7 83,558 - -2.9 83,626 + +2.2 83,626 + -0.6 83,695 - -0.5 83,853 + EX28DRAFT_4418 0.12 -3.2 84,072 - EX28DRAFT_4418 0.20 -3.8 84,211 + EX28DRAFT_4418 0.25 -1.5 84,336 + EX28DRAFT_4418 0.30 -0.6 84,607 + EX28DRAFT_4418 0.40 -4.6 84,784 - EX28DRAFT_4418 0.47 -3.7 85,014 - EX28DRAFT_4418 0.55 -4.6 85,014 - EX28DRAFT_4418 0.55 -0.2 85,118 - EX28DRAFT_4418 0.59 -0.6 85,118 - EX28DRAFT_4418 0.59 -4.0 85,540 - EX28DRAFT_4418 0.75 -2.2 85,543 + EX28DRAFT_4418 0.75 -2.4 85,544 - EX28DRAFT_4418 0.75 -3.5 85,544 - EX28DRAFT_4418 0.75 -0.3 86,167 + -2.2 86,170 + -5.1 86,198 - -3.6 86,276 - +0.9 86,285 + -4.1 86,332 - -0.2 86,332 - -0.0 86,374 + +1.2 86,471 - -0.9 86,632 + EX28DRAFT_4419 0.14 -1.1 86,633 - EX28DRAFT_4419 0.14 -2.1 87,163 + EX28DRAFT_4419 0.60 -0.9
Or see this region's nucleotide sequence