Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4413

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4412 and EX28DRAFT_4413 are separated by 226 nucleotidesEX28DRAFT_4413 and EX28DRAFT_4414 are separated by 147 nucleotides EX28DRAFT_4412: EX28DRAFT_4412 - aspartate kinase (EC 2.7.2.4), at 74,823 to 77,255 _4412 EX28DRAFT_4413: EX28DRAFT_4413 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 77,482 to 78,369 _4413 EX28DRAFT_4414: EX28DRAFT_4414 - catalase/peroxidase HPI, at 78,517 to 80,697 _4414 Position (kb) 77 78 79Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 76.494 kb on + strand, within EX28DRAFT_4412at 76.559 kb on + strand, within EX28DRAFT_4412at 76.565 kb on + strand, within EX28DRAFT_4412at 76.569 kb on + strand, within EX28DRAFT_4412at 76.618 kb on - strand, within EX28DRAFT_4412at 76.618 kb on - strand, within EX28DRAFT_4412at 76.798 kb on + strand, within EX28DRAFT_4412at 76.840 kb on + strand, within EX28DRAFT_4412at 76.840 kb on + strand, within EX28DRAFT_4412at 76.841 kb on - strand, within EX28DRAFT_4412at 76.847 kb on + strand, within EX28DRAFT_4412at 76.991 kb on - strand, within EX28DRAFT_4412at 76.991 kb on - strand, within EX28DRAFT_4412at 77.034 kb on + strandat 77.338 kb on + strandat 77.338 kb on + strandat 77.338 kb on + strandat 77.372 kb on + strandat 77.372 kb on + strandat 77.372 kb on + strandat 77.373 kb on - strandat 77.376 kb on + strandat 77.376 kb on + strandat 77.376 kb on + strandat 77.377 kb on - strandat 77.476 kb on + strandat 77.476 kb on + strandat 77.477 kb on - strandat 77.477 kb on - strandat 77.481 kb on + strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.625 kb on + strand, within EX28DRAFT_4413at 77.660 kb on - strand, within EX28DRAFT_4413at 77.721 kb on + strand, within EX28DRAFT_4413at 77.798 kb on - strand, within EX28DRAFT_4413at 77.821 kb on - strand, within EX28DRAFT_4413at 77.821 kb on - strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 78.052 kb on + strand, within EX28DRAFT_4413at 78.053 kb on - strand, within EX28DRAFT_4413at 78.053 kb on - strand, within EX28DRAFT_4413at 78.126 kb on + strand, within EX28DRAFT_4413at 78.127 kb on - strand, within EX28DRAFT_4413at 78.156 kb on + strand, within EX28DRAFT_4413at 78.247 kb on - strand, within EX28DRAFT_4413at 78.304 kb on + strandat 78.305 kb on - strandat 78.305 kb on - strandat 78.305 kb on - strandat 78.307 kb on - strandat 78.331 kb on + strandat 78.346 kb on - strandat 78.346 kb on - strandat 78.371 kb on - strandat 78.371 kb on - strandat 78.371 kb on - strandat 78.371 kb on - strandat 78.429 kb on + strandat 78.459 kb on - strandat 78.460 kb on + strandat 78.465 kb on + strandat 78.466 kb on - strandat 78.466 kb on - strandat 78.471 kb on + strandat 78.479 kb on + strandat 78.479 kb on + strandat 78.479 kb on + strandat 78.479 kb on + strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.482 kb on - strandat 78.493 kb on - strandat 78.493 kb on - strandat 78.501 kb on - strandat 78.501 kb on - strandat 78.631 kb on - strandat 78.727 kb on + strandat 78.727 kb on + strandat 78.847 kb on + strand, within EX28DRAFT_4414at 78.963 kb on + strand, within EX28DRAFT_4414at 78.974 kb on - strand, within EX28DRAFT_4414at 79.192 kb on + strand, within EX28DRAFT_4414at 79.193 kb on - strand, within EX28DRAFT_4414at 79.193 kb on - strand, within EX28DRAFT_4414at 79.193 kb on - strand, within EX28DRAFT_4414

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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76,494 + EX28DRAFT_4412 0.69 +0.6
76,559 + EX28DRAFT_4412 0.71 -0.4
76,565 + EX28DRAFT_4412 0.72 -0.4
76,569 + EX28DRAFT_4412 0.72 +0.3
76,618 - EX28DRAFT_4412 0.74 +0.5
76,618 - EX28DRAFT_4412 0.74 +0.2
76,798 + EX28DRAFT_4412 0.81 +0.8
76,840 + EX28DRAFT_4412 0.83 +0.1
76,840 + EX28DRAFT_4412 0.83 +0.6
76,841 - EX28DRAFT_4412 0.83 +0.7
76,847 + EX28DRAFT_4412 0.83 +0.4
76,991 - EX28DRAFT_4412 0.89 +0.2
76,991 - EX28DRAFT_4412 0.89 +0.7
77,034 + -2.0
77,338 + +0.3
77,338 + -0.1
77,338 + +0.0
77,372 + -0.0
77,372 + +0.0
77,372 + -0.7
77,373 - -0.2
77,376 + +1.1
77,376 + -0.2
77,376 + -1.5
77,377 - +0.7
77,476 + -0.8
77,476 + -0.6
77,477 - -2.1
77,477 - +0.0
77,481 + -1.8
77,482 - -1.1
77,482 - -0.6
77,482 - -1.2
77,482 - -0.9
77,625 + EX28DRAFT_4413 0.16 -1.2
77,660 - EX28DRAFT_4413 0.20 -0.9
77,721 + EX28DRAFT_4413 0.27 -0.4
77,798 - EX28DRAFT_4413 0.36 -0.1
77,821 - EX28DRAFT_4413 0.38 +1.5
77,821 - EX28DRAFT_4413 0.38 -1.4
77,872 + EX28DRAFT_4413 0.44 -1.1
77,872 + EX28DRAFT_4413 0.44 -3.9
77,872 + EX28DRAFT_4413 0.44 -1.4
77,872 + EX28DRAFT_4413 0.44 -3.3
77,872 + EX28DRAFT_4413 0.44 -2.1
77,872 + EX28DRAFT_4413 0.44 -1.9
77,873 - EX28DRAFT_4413 0.44 -0.9
77,873 - EX28DRAFT_4413 0.44 -0.1
77,873 - EX28DRAFT_4413 0.44 -0.6
77,873 - EX28DRAFT_4413 0.44 -0.8
77,873 - EX28DRAFT_4413 0.44 -1.8
77,873 - EX28DRAFT_4413 0.44 -1.9
77,873 - EX28DRAFT_4413 0.44 -1.4
78,052 + EX28DRAFT_4413 0.64 -2.5
78,053 - EX28DRAFT_4413 0.64 -1.0
78,053 - EX28DRAFT_4413 0.64 -1.4
78,126 + EX28DRAFT_4413 0.73 -1.6
78,127 - EX28DRAFT_4413 0.73 -1.3
78,156 + EX28DRAFT_4413 0.76 -2.2
78,247 - EX28DRAFT_4413 0.86 -4.3
78,304 + -0.9
78,305 - -1.6
78,305 - -2.1
78,305 - +0.7
78,307 - -2.2
78,331 + +0.5
78,346 - +0.1
78,346 - -1.2
78,371 - -1.4
78,371 - +0.2
78,371 - +1.0
78,371 - +0.2
78,429 + +0.2
78,459 - -0.2
78,460 + +0.6
78,465 + +0.7
78,466 - +1.1
78,466 - -0.1
78,471 + +0.8
78,479 + +1.1
78,479 + -0.6
78,479 + +0.6
78,479 + +0.6
78,480 - -0.2
78,480 - -2.3
78,480 - +0.4
78,480 - +0.4
78,480 - -0.1
78,480 - -1.9
78,482 - +0.6
78,493 - +0.2
78,493 - +1.0
78,501 - -0.0
78,501 - -1.1
78,631 - +0.3
78,727 + +0.8
78,727 + +0.2
78,847 + EX28DRAFT_4414 0.15 +1.2
78,963 + EX28DRAFT_4414 0.20 -0.4
78,974 - EX28DRAFT_4414 0.21 +0.2
79,192 + EX28DRAFT_4414 0.31 +1.2
79,193 - EX28DRAFT_4414 0.31 +0.3
79,193 - EX28DRAFT_4414 0.31 -0.7
79,193 - EX28DRAFT_4414 0.31 -0.2

Or see this region's nucleotide sequence