Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4386 and EX28DRAFT_4387 overlap by 4 nucleotides EX28DRAFT_4387 and EX28DRAFT_4388 are separated by 150 nucleotides EX28DRAFT_4388 and EX28DRAFT_4389 are separated by 152 nucleotides
EX28DRAFT_4386: EX28DRAFT_4386 - Signal transduction histidine kinase, at 49,095 to 50,468
_4386
EX28DRAFT_4387: EX28DRAFT_4387 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 50,465 to 51,163
_4387
EX28DRAFT_4388: EX28DRAFT_4388 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 51,314 to 51,820
_4388
EX28DRAFT_4389: EX28DRAFT_4389 - cation diffusion facilitator family transporter, at 51,973 to 52,866
_4389
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 50.275 kb on - strand, within EX28DRAFT_4386 at 50.398 kb on - strand at 50.667 kb on + strand, within EX28DRAFT_4387 at 50.667 kb on + strand, within EX28DRAFT_4387 at 50.668 kb on - strand, within EX28DRAFT_4387 at 50.767 kb on + strand, within EX28DRAFT_4387 at 50.768 kb on - strand, within EX28DRAFT_4387 at 50.980 kb on + strand, within EX28DRAFT_4387 at 50.981 kb on - strand, within EX28DRAFT_4387 at 51.157 kb on + strand at 51.168 kb on + strand at 51.168 kb on + strand at 51.168 kb on + strand at 51.169 kb on - strand at 51.209 kb on - strand at 51.222 kb on - strand at 51.231 kb on + strand at 51.231 kb on + strand at 51.232 kb on - strand at 51.265 kb on + strand at 51.265 kb on + strand at 51.266 kb on - strand at 51.385 kb on + strand, within EX28DRAFT_4388 at 51.408 kb on + strand, within EX28DRAFT_4388 at 51.409 kb on - strand, within EX28DRAFT_4388 at 51.445 kb on + strand, within EX28DRAFT_4388 at 51.445 kb on + strand, within EX28DRAFT_4388 at 51.446 kb on - strand, within EX28DRAFT_4388 at 51.446 kb on - strand, within EX28DRAFT_4388 at 51.460 kb on - strand, within EX28DRAFT_4388 at 51.645 kb on + strand, within EX28DRAFT_4388 at 51.645 kb on + strand, within EX28DRAFT_4388 at 51.646 kb on - strand, within EX28DRAFT_4388 at 51.797 kb on - strand at 51.808 kb on + strand at 51.839 kb on + strand at 51.839 kb on + strand at 51.921 kb on + strand at 51.921 kb on + strand at 51.943 kb on + strand at 51.944 kb on - strand at 51.944 kb on - strand at 51.944 kb on - strand at 51.946 kb on + strand at 51.947 kb on - strand at 51.972 kb on + strand at 51.986 kb on - strand at 52.069 kb on + strand, within EX28DRAFT_4389 at 52.087 kb on - strand, within EX28DRAFT_4389
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 50,275 - EX28DRAFT_4386 0.86 -1.1 50,398 - -3.1 50,667 + EX28DRAFT_4387 0.29 -0.0 50,667 + EX28DRAFT_4387 0.29 +1.4 50,668 - EX28DRAFT_4387 0.29 +0.4 50,767 + EX28DRAFT_4387 0.43 +0.9 50,768 - EX28DRAFT_4387 0.43 +1.3 50,980 + EX28DRAFT_4387 0.74 +0.0 50,981 - EX28DRAFT_4387 0.74 +0.4 51,157 + +0.7 51,168 + +1.3 51,168 + +1.5 51,168 + +1.4 51,169 - -0.7 51,209 - +0.8 51,222 - -0.2 51,231 + +0.1 51,231 + +0.5 51,232 - -0.8 51,265 + +0.0 51,265 + -0.5 51,266 - -0.2 51,385 + EX28DRAFT_4388 0.14 -0.6 51,408 + EX28DRAFT_4388 0.19 -1.1 51,409 - EX28DRAFT_4388 0.19 -0.3 51,445 + EX28DRAFT_4388 0.26 +0.0 51,445 + EX28DRAFT_4388 0.26 -0.3 51,446 - EX28DRAFT_4388 0.26 -0.7 51,446 - EX28DRAFT_4388 0.26 -0.2 51,460 - EX28DRAFT_4388 0.29 +0.8 51,645 + EX28DRAFT_4388 0.65 -0.4 51,645 + EX28DRAFT_4388 0.65 -0.6 51,646 - EX28DRAFT_4388 0.65 -0.6 51,797 - -0.1 51,808 + +2.1 51,839 + -1.5 51,839 + +0.3 51,921 + -0.2 51,921 + -0.6 51,943 + +0.0 51,944 - -0.3 51,944 - -0.5 51,944 - -0.8 51,946 + -0.6 51,947 - -0.4 51,972 + -1.1 51,986 - -0.6 52,069 + EX28DRAFT_4389 0.11 -1.9 52,087 - EX28DRAFT_4389 0.13 -1.1
Or see this region's nucleotide sequence