Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4379 and EX28DRAFT_4380 are separated by 114 nucleotides EX28DRAFT_4380 and EX28DRAFT_4381 are separated by 39 nucleotides EX28DRAFT_4381 and EX28DRAFT_4382 overlap by 1 nucleotides EX28DRAFT_4382 and EX28DRAFT_4383 are separated by 103 nucleotides
EX28DRAFT_4379: EX28DRAFT_4379 - formate dehydrogenase family accessory protein FdhD, at 44,585 to 45,421
_4379
EX28DRAFT_4380: EX28DRAFT_4380 - Protein of unknown function (DUF1471), at 45,536 to 45,748
_4380
EX28DRAFT_4381: EX28DRAFT_4381 - Branched-chain amino acid transport protein (AzlD), at 45,788 to 46,111
_4381
EX28DRAFT_4382: EX28DRAFT_4382 - Predicted branched-chain amino acid permease (azaleucine resistance), at 46,111 to 46,770
_4382
EX28DRAFT_4383: EX28DRAFT_4383 - transcriptional regulator, XRE family with cupin sensor, at 46,874 to 47,422
_4383
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 44.828 kb on + strand, within EX28DRAFT_4379 at 44.829 kb on - strand, within EX28DRAFT_4379 at 44.829 kb on - strand, within EX28DRAFT_4379 at 45.060 kb on + strand, within EX28DRAFT_4379 at 45.060 kb on + strand, within EX28DRAFT_4379 at 45.245 kb on + strand, within EX28DRAFT_4379 at 45.246 kb on - strand, within EX28DRAFT_4379 at 45.386 kb on + strand at 45.386 kb on + strand at 45.386 kb on + strand at 45.386 kb on + strand at 45.455 kb on - strand at 45.475 kb on - strand at 45.477 kb on + strand at 45.477 kb on + strand at 45.477 kb on + strand at 45.646 kb on + strand, within EX28DRAFT_4380 at 45.742 kb on + strand at 45.794 kb on + strand at 45.795 kb on - strand at 45.821 kb on + strand, within EX28DRAFT_4381 at 45.852 kb on - strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.057 kb on - strand, within EX28DRAFT_4381 at 46.276 kb on + strand, within EX28DRAFT_4382 at 46.378 kb on + strand, within EX28DRAFT_4382 at 46.379 kb on - strand, within EX28DRAFT_4382 at 46.379 kb on - strand, within EX28DRAFT_4382 at 46.590 kb on + strand, within EX28DRAFT_4382 at 46.596 kb on + strand, within EX28DRAFT_4382 at 46.633 kb on + strand, within EX28DRAFT_4382 at 46.633 kb on + strand, within EX28DRAFT_4382 at 46.661 kb on + strand, within EX28DRAFT_4382 at 46.683 kb on - strand, within EX28DRAFT_4382 at 46.733 kb on - strand at 46.770 kb on + strand at 46.871 kb on + strand at 46.871 kb on + strand at 46.871 kb on + strand at 46.871 kb on + strand at 46.972 kb on + strand, within EX28DRAFT_4383 at 47.056 kb on - strand, within EX28DRAFT_4383
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 44,828 + EX28DRAFT_4379 0.29 -1.1 44,829 - EX28DRAFT_4379 0.29 -0.5 44,829 - EX28DRAFT_4379 0.29 +0.3 45,060 + EX28DRAFT_4379 0.57 -1.3 45,060 + EX28DRAFT_4379 0.57 -0.1 45,245 + EX28DRAFT_4379 0.79 +0.5 45,246 - EX28DRAFT_4379 0.79 +0.6 45,386 + +0.5 45,386 + -0.5 45,386 + +0.1 45,386 + +0.0 45,455 - +0.1 45,475 - +0.5 45,477 + +0.2 45,477 + +1.3 45,477 + +0.3 45,646 + EX28DRAFT_4380 0.52 +0.3 45,742 + -1.7 45,794 + +0.1 45,795 - -0.3 45,821 + EX28DRAFT_4381 0.10 +1.2 45,852 - EX28DRAFT_4381 0.20 +0.6 46,056 + EX28DRAFT_4381 0.83 -0.2 46,056 + EX28DRAFT_4381 0.83 +0.7 46,056 + EX28DRAFT_4381 0.83 -2.8 46,056 + EX28DRAFT_4381 0.83 -0.8 46,057 - EX28DRAFT_4381 0.83 +0.2 46,276 + EX28DRAFT_4382 0.25 +0.1 46,378 + EX28DRAFT_4382 0.40 -0.6 46,379 - EX28DRAFT_4382 0.41 -0.5 46,379 - EX28DRAFT_4382 0.41 -1.6 46,590 + EX28DRAFT_4382 0.73 +0.3 46,596 + EX28DRAFT_4382 0.73 -0.4 46,633 + EX28DRAFT_4382 0.79 +0.3 46,633 + EX28DRAFT_4382 0.79 -0.1 46,661 + EX28DRAFT_4382 0.83 +0.0 46,683 - EX28DRAFT_4382 0.87 +0.2 46,733 - +0.5 46,770 + +0.3 46,871 + -0.1 46,871 + -0.3 46,871 + -0.0 46,871 + +0.9 46,972 + EX28DRAFT_4383 0.18 +0.2 47,056 - EX28DRAFT_4383 0.33 -2.6
Or see this region's nucleotide sequence