Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4360 and EX28DRAFT_4361 are separated by 155 nucleotides EX28DRAFT_4361 and EX28DRAFT_4362 are separated by 34 nucleotides EX28DRAFT_4362 and EX28DRAFT_4363 are separated by 39 nucleotides
EX28DRAFT_4360: EX28DRAFT_4360 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 25,735 to 26,625
_4360
EX28DRAFT_4361: EX28DRAFT_4361 - Sugar kinases, ribokinase family, at 26,781 to 27,677
_4361
EX28DRAFT_4362: EX28DRAFT_4362 - transcriptional regulator, DeoR family, at 27,712 to 28,506
_4362
EX28DRAFT_4363: EX28DRAFT_4363 - outer membrane autotransporter barrel domain, at 28,546 to 31,473
_4363
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 26.099 kb on + strand, within EX28DRAFT_4360 at 26.100 kb on - strand, within EX28DRAFT_4360 at 26.100 kb on - strand, within EX28DRAFT_4360 at 26.103 kb on + strand, within EX28DRAFT_4360 at 26.110 kb on - strand, within EX28DRAFT_4360 at 26.347 kb on - strand, within EX28DRAFT_4360 at 26.347 kb on - strand, within EX28DRAFT_4360 at 26.727 kb on + strand at 26.745 kb on - strand at 26.862 kb on + strand at 26.862 kb on + strand at 26.863 kb on - strand at 27.030 kb on - strand, within EX28DRAFT_4361 at 27.109 kb on - strand, within EX28DRAFT_4361 at 27.154 kb on + strand, within EX28DRAFT_4361 at 27.181 kb on + strand, within EX28DRAFT_4361 at 27.408 kb on + strand, within EX28DRAFT_4361 at 27.408 kb on + strand, within EX28DRAFT_4361 at 27.482 kb on - strand, within EX28DRAFT_4361 at 27.629 kb on + strand at 27.631 kb on + strand at 27.783 kb on + strand at 27.988 kb on + strand, within EX28DRAFT_4362 at 27.989 kb on - strand, within EX28DRAFT_4362 at 28.009 kb on - strand, within EX28DRAFT_4362 at 28.066 kb on - strand, within EX28DRAFT_4362 at 28.066 kb on - strand, within EX28DRAFT_4362 at 28.116 kb on + strand, within EX28DRAFT_4362 at 28.116 kb on + strand, within EX28DRAFT_4362 at 28.462 kb on - strand at 28.496 kb on - strand at 28.560 kb on - strand at 28.592 kb on + strand at 28.592 kb on + strand at 28.593 kb on - strand at 28.630 kb on + strand at 28.647 kb on + strand at 28.651 kb on - strand at 28.660 kb on + strand at 28.660 kb on + strand at 28.661 kb on - strand at 28.671 kb on + strand at 28.671 kb on + strand at 28.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 26,099 + EX28DRAFT_4360 0.41 -1.3 26,100 - EX28DRAFT_4360 0.41 +0.1 26,100 - EX28DRAFT_4360 0.41 -2.2 26,103 + EX28DRAFT_4360 0.41 +0.1 26,110 - EX28DRAFT_4360 0.42 +0.2 26,347 - EX28DRAFT_4360 0.69 +1.1 26,347 - EX28DRAFT_4360 0.69 +1.2 26,727 + -0.8 26,745 - +0.1 26,862 + +0.4 26,862 + -0.3 26,863 - -0.1 27,030 - EX28DRAFT_4361 0.28 +0.3 27,109 - EX28DRAFT_4361 0.37 -0.1 27,154 + EX28DRAFT_4361 0.42 +0.5 27,181 + EX28DRAFT_4361 0.45 +0.4 27,408 + EX28DRAFT_4361 0.70 +0.9 27,408 + EX28DRAFT_4361 0.70 +0.9 27,482 - EX28DRAFT_4361 0.78 +0.6 27,629 + -0.0 27,631 + +0.5 27,783 + +0.5 27,988 + EX28DRAFT_4362 0.35 +0.3 27,989 - EX28DRAFT_4362 0.35 +0.5 28,009 - EX28DRAFT_4362 0.37 +0.4 28,066 - EX28DRAFT_4362 0.45 +0.8 28,066 - EX28DRAFT_4362 0.45 +0.5 28,116 + EX28DRAFT_4362 0.51 +0.6 28,116 + EX28DRAFT_4362 0.51 -0.7 28,462 - +0.1 28,496 - +0.4 28,560 - +0.5 28,592 + -0.6 28,592 + -0.3 28,593 - -0.3 28,630 + -2.9 28,647 + -0.1 28,651 - +0.1 28,660 + +1.6 28,660 + +0.8 28,661 - +1.4 28,671 + +0.6 28,671 + -0.3 28,672 - +0.4
Or see this region's nucleotide sequence