Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4356

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4355 and EX28DRAFT_4356 are separated by 43 nucleotidesEX28DRAFT_4356 and EX28DRAFT_4357 are separated by 45 nucleotides EX28DRAFT_4355: EX28DRAFT_4355 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 18,649 to 20,073 _4355 EX28DRAFT_4356: EX28DRAFT_4356 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 20,117 to 21,499 _4356 EX28DRAFT_4357: EX28DRAFT_4357 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 21,545 to 23,569 _4357 Position (kb) 20 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 19.274 kb on + strand, within EX28DRAFT_4355at 19.274 kb on + strand, within EX28DRAFT_4355at 19.283 kb on + strand, within EX28DRAFT_4355at 19.284 kb on - strand, within EX28DRAFT_4355at 19.284 kb on - strand, within EX28DRAFT_4355at 19.286 kb on + strand, within EX28DRAFT_4355at 19.286 kb on + strand, within EX28DRAFT_4355at 19.404 kb on + strand, within EX28DRAFT_4355at 19.405 kb on - strand, within EX28DRAFT_4355at 19.405 kb on - strand, within EX28DRAFT_4355at 19.431 kb on - strand, within EX28DRAFT_4355at 19.431 kb on - strand, within EX28DRAFT_4355at 19.451 kb on + strand, within EX28DRAFT_4355at 19.683 kb on - strand, within EX28DRAFT_4355at 19.919 kb on + strand, within EX28DRAFT_4355at 19.919 kb on + strand, within EX28DRAFT_4355at 19.920 kb on - strand, within EX28DRAFT_4355at 19.920 kb on - strand, within EX28DRAFT_4355at 20.039 kb on - strandat 20.064 kb on + strandat 20.065 kb on - strandat 20.065 kb on - strandat 20.065 kb on - strandat 20.065 kb on - strandat 20.065 kb on - strandat 20.107 kb on - strandat 20.119 kb on - strandat 20.126 kb on - strandat 20.126 kb on - strandat 20.163 kb on + strandat 20.163 kb on + strandat 20.163 kb on + strandat 20.163 kb on + strandat 20.163 kb on + strandat 20.164 kb on - strandat 20.164 kb on - strandat 20.164 kb on - strandat 20.164 kb on - strandat 20.164 kb on - strandat 20.164 kb on - strandat 20.185 kb on - strandat 20.237 kb on - strandat 20.237 kb on - strandat 20.237 kb on - strandat 20.240 kb on + strandat 20.241 kb on - strandat 20.241 kb on - strandat 20.349 kb on - strand, within EX28DRAFT_4356at 20.529 kb on + strand, within EX28DRAFT_4356at 20.574 kb on + strand, within EX28DRAFT_4356at 20.575 kb on - strand, within EX28DRAFT_4356at 20.661 kb on + strand, within EX28DRAFT_4356at 20.661 kb on + strand, within EX28DRAFT_4356at 20.662 kb on - strand, within EX28DRAFT_4356at 20.662 kb on - strand, within EX28DRAFT_4356at 20.662 kb on - strand, within EX28DRAFT_4356at 20.691 kb on + strand, within EX28DRAFT_4356at 20.692 kb on - strand, within EX28DRAFT_4356at 20.700 kb on + strand, within EX28DRAFT_4356at 20.703 kb on + strand, within EX28DRAFT_4356at 20.768 kb on - strand, within EX28DRAFT_4356at 20.853 kb on + strand, within EX28DRAFT_4356at 20.875 kb on - strand, within EX28DRAFT_4356at 20.887 kb on + strand, within EX28DRAFT_4356at 20.887 kb on + strand, within EX28DRAFT_4356at 20.888 kb on - strand, within EX28DRAFT_4356at 20.888 kb on - strand, within EX28DRAFT_4356at 20.932 kb on - strand, within EX28DRAFT_4356at 20.932 kb on - strand, within EX28DRAFT_4356at 20.987 kb on - strand, within EX28DRAFT_4356at 21.118 kb on - strand, within EX28DRAFT_4356at 21.220 kb on - strand, within EX28DRAFT_4356at 21.342 kb on + strand, within EX28DRAFT_4356at 21.373 kb on - strandat 21.416 kb on - strandat 21.455 kb on - strandat 21.467 kb on + strandat 21.468 kb on - strandat 21.487 kb on + strandat 21.488 kb on - strandat 21.488 kb on - strandat 21.488 kb on - strandat 21.500 kb on + strandat 21.501 kb on - strandat 21.503 kb on + strandat 21.504 kb on - strandat 21.504 kb on - strandat 21.550 kb on + strandat 21.551 kb on - strandat 21.557 kb on + strandat 21.557 kb on + strandat 21.558 kb on - strandat 21.558 kb on - strandat 21.558 kb on - strandat 21.696 kb on + strandat 21.762 kb on + strand, within EX28DRAFT_4357at 21.769 kb on - strand, within EX28DRAFT_4357at 21.802 kb on - strand, within EX28DRAFT_4357at 21.870 kb on + strand, within EX28DRAFT_4357at 21.871 kb on - strand, within EX28DRAFT_4357at 22.057 kb on + strand, within EX28DRAFT_4357at 22.274 kb on - strand, within EX28DRAFT_4357at 22.274 kb on - strand, within EX28DRAFT_4357at 22.357 kb on - strand, within EX28DRAFT_4357at 22.470 kb on + strand, within EX28DRAFT_4357

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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19,274 + EX28DRAFT_4355 0.44 -0.9
19,274 + EX28DRAFT_4355 0.44 -0.4
19,283 + EX28DRAFT_4355 0.44 -0.7
19,284 - EX28DRAFT_4355 0.45 -0.1
19,284 - EX28DRAFT_4355 0.45 -0.0
19,286 + EX28DRAFT_4355 0.45 +0.7
19,286 + EX28DRAFT_4355 0.45 +0.5
19,404 + EX28DRAFT_4355 0.53 -1.6
19,405 - EX28DRAFT_4355 0.53 +0.3
19,405 - EX28DRAFT_4355 0.53 -0.2
19,431 - EX28DRAFT_4355 0.55 -1.2
19,431 - EX28DRAFT_4355 0.55 -0.8
19,451 + EX28DRAFT_4355 0.56 +0.4
19,683 - EX28DRAFT_4355 0.73 +0.8
19,919 + EX28DRAFT_4355 0.89 +0.1
19,919 + EX28DRAFT_4355 0.89 +0.3
19,920 - EX28DRAFT_4355 0.89 +0.6
19,920 - EX28DRAFT_4355 0.89 +0.5
20,039 - -0.3
20,064 + -0.8
20,065 - -0.3
20,065 - +0.4
20,065 - -0.4
20,065 - +0.2
20,065 - -0.1
20,107 - +1.2
20,119 - -0.1
20,126 - +1.0
20,126 - -0.3
20,163 + +0.5
20,163 + -0.8
20,163 + -0.2
20,163 + -0.1
20,163 + -1.2
20,164 - +0.0
20,164 - -0.1
20,164 - +0.2
20,164 - +0.5
20,164 - +0.4
20,164 - -1.1
20,185 - +0.2
20,237 - +0.7
20,237 - +0.2
20,237 - +1.0
20,240 + +0.5
20,241 - +2.4
20,241 - +0.2
20,349 - EX28DRAFT_4356 0.17 +0.6
20,529 + EX28DRAFT_4356 0.30 +0.3
20,574 + EX28DRAFT_4356 0.33 +0.6
20,575 - EX28DRAFT_4356 0.33 +0.1
20,661 + EX28DRAFT_4356 0.39 +1.8
20,661 + EX28DRAFT_4356 0.39 -0.5
20,662 - EX28DRAFT_4356 0.39 +0.6
20,662 - EX28DRAFT_4356 0.39 +0.1
20,662 - EX28DRAFT_4356 0.39 -0.2
20,691 + EX28DRAFT_4356 0.42 -0.3
20,692 - EX28DRAFT_4356 0.42 -0.1
20,700 + EX28DRAFT_4356 0.42 -1.5
20,703 + EX28DRAFT_4356 0.42 -3.5
20,768 - EX28DRAFT_4356 0.47 -0.4
20,853 + EX28DRAFT_4356 0.53 +0.3
20,875 - EX28DRAFT_4356 0.55 -0.0
20,887 + EX28DRAFT_4356 0.56 -0.3
20,887 + EX28DRAFT_4356 0.56 -0.4
20,888 - EX28DRAFT_4356 0.56 +0.6
20,888 - EX28DRAFT_4356 0.56 +0.3
20,932 - EX28DRAFT_4356 0.59 -0.9
20,932 - EX28DRAFT_4356 0.59 +0.3
20,987 - EX28DRAFT_4356 0.63 -0.3
21,118 - EX28DRAFT_4356 0.72 +1.1
21,220 - EX28DRAFT_4356 0.80 +0.2
21,342 + EX28DRAFT_4356 0.89 +0.6
21,373 - +0.3
21,416 - -0.3
21,455 - -0.5
21,467 + +1.3
21,468 - -1.0
21,487 + +0.1
21,488 - -0.6
21,488 - -0.4
21,488 - +0.3
21,500 + -1.4
21,501 - +0.5
21,503 + +0.3
21,504 - +0.0
21,504 - -0.0
21,550 + -0.1
21,551 - -0.1
21,557 + -0.4
21,557 + +0.8
21,558 - +0.4
21,558 - +0.4
21,558 - +0.4
21,696 + +0.3
21,762 + EX28DRAFT_4357 0.11 -2.3
21,769 - EX28DRAFT_4357 0.11 +0.1
21,802 - EX28DRAFT_4357 0.13 +0.0
21,870 + EX28DRAFT_4357 0.16 +0.7
21,871 - EX28DRAFT_4357 0.16 -0.4
22,057 + EX28DRAFT_4357 0.25 -0.6
22,274 - EX28DRAFT_4357 0.36 +0.2
22,274 - EX28DRAFT_4357 0.36 +0.0
22,357 - EX28DRAFT_4357 0.40 -0.3
22,470 + EX28DRAFT_4357 0.46 +0.3

Or see this region's nucleotide sequence