Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4353 and EX28DRAFT_4354 are separated by 51 nucleotides EX28DRAFT_4354 and EX28DRAFT_4355 are separated by 74 nucleotides
EX28DRAFT_4353: EX28DRAFT_4353 - GTP-binding protein TypA/BipA, at 16,013 to 17,836
_4353
EX28DRAFT_4354: EX28DRAFT_4354 - Oligogalacturonate-specific porin protein (KdgM), at 17,888 to 18,574
_4354
EX28DRAFT_4355: EX28DRAFT_4355 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 18,649 to 20,073
_4355
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1
2 at 17.850 kb on + strand at 17.910 kb on - strand at 17.937 kb on + strand at 17.938 kb on - strand at 17.938 kb on - strand at 17.938 kb on - strand at 17.998 kb on + strand, within EX28DRAFT_4354 at 18.000 kb on + strand, within EX28DRAFT_4354 at 18.000 kb on + strand, within EX28DRAFT_4354 at 18.093 kb on + strand, within EX28DRAFT_4354 at 18.094 kb on - strand, within EX28DRAFT_4354 at 18.155 kb on - strand, within EX28DRAFT_4354 at 18.171 kb on + strand, within EX28DRAFT_4354 at 18.187 kb on - strand, within EX28DRAFT_4354 at 18.187 kb on - strand, within EX28DRAFT_4354 at 18.200 kb on - strand, within EX28DRAFT_4354 at 18.200 kb on - strand, within EX28DRAFT_4354 at 18.202 kb on - strand, within EX28DRAFT_4354 at 18.250 kb on + strand, within EX28DRAFT_4354 at 18.251 kb on - strand, within EX28DRAFT_4354 at 18.251 kb on - strand, within EX28DRAFT_4354 at 18.254 kb on + strand, within EX28DRAFT_4354 at 18.255 kb on - strand, within EX28DRAFT_4354 at 18.255 kb on - strand, within EX28DRAFT_4354 at 18.356 kb on + strand, within EX28DRAFT_4354 at 18.356 kb on + strand, within EX28DRAFT_4354 at 18.356 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.367 kb on - strand, within EX28DRAFT_4354 at 18.401 kb on - strand, within EX28DRAFT_4354 at 18.403 kb on - strand, within EX28DRAFT_4354 at 18.442 kb on + strand, within EX28DRAFT_4354 at 18.490 kb on - strand, within EX28DRAFT_4354 at 18.510 kb on + strand at 18.510 kb on + strand at 18.587 kb on + strand at 18.587 kb on + strand at 18.588 kb on - strand at 18.588 kb on - strand at 18.644 kb on + strand at 18.644 kb on + strand at 18.645 kb on - strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.672 kb on + strand at 18.686 kb on - strand at 18.767 kb on + strand at 18.836 kb on - strand, within EX28DRAFT_4355 at 18.878 kb on + strand, within EX28DRAFT_4355 at 18.878 kb on + strand, within EX28DRAFT_4355 at 18.878 kb on + strand, within EX28DRAFT_4355 at 18.898 kb on - strand, within EX28DRAFT_4355 at 18.960 kb on - strand, within EX28DRAFT_4355 at 19.039 kb on - strand, within EX28DRAFT_4355 at 19.042 kb on - strand, within EX28DRAFT_4355 at 19.042 kb on - strand, within EX28DRAFT_4355 at 19.274 kb on + strand, within EX28DRAFT_4355 at 19.274 kb on + strand, within EX28DRAFT_4355 at 19.283 kb on + strand, within EX28DRAFT_4355 at 19.284 kb on - strand, within EX28DRAFT_4355 at 19.284 kb on - strand, within EX28DRAFT_4355 at 19.286 kb on + strand, within EX28DRAFT_4355 at 19.286 kb on + strand, within EX28DRAFT_4355 at 19.404 kb on + strand, within EX28DRAFT_4355 at 19.405 kb on - strand, within EX28DRAFT_4355 at 19.405 kb on - strand, within EX28DRAFT_4355 at 19.431 kb on - strand, within EX28DRAFT_4355 at 19.431 kb on - strand, within EX28DRAFT_4355 at 19.451 kb on + strand, within EX28DRAFT_4355
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 17,850 + +0.9 17,910 - -0.1 17,937 + -0.6 17,938 - -0.1 17,938 - -1.4 17,938 - -0.1 17,998 + EX28DRAFT_4354 0.16 -0.5 18,000 + EX28DRAFT_4354 0.16 -0.4 18,000 + EX28DRAFT_4354 0.16 -0.6 18,093 + EX28DRAFT_4354 0.30 +0.2 18,094 - EX28DRAFT_4354 0.30 +0.3 18,155 - EX28DRAFT_4354 0.39 -0.5 18,171 + EX28DRAFT_4354 0.41 +1.8 18,187 - EX28DRAFT_4354 0.44 -0.3 18,187 - EX28DRAFT_4354 0.44 +0.1 18,200 - EX28DRAFT_4354 0.45 +0.1 18,200 - EX28DRAFT_4354 0.45 +1.0 18,202 - EX28DRAFT_4354 0.46 -1.2 18,250 + EX28DRAFT_4354 0.53 +0.5 18,251 - EX28DRAFT_4354 0.53 -0.1 18,251 - EX28DRAFT_4354 0.53 +0.0 18,254 + EX28DRAFT_4354 0.53 -0.2 18,255 - EX28DRAFT_4354 0.53 +1.5 18,255 - EX28DRAFT_4354 0.53 -0.8 18,356 + EX28DRAFT_4354 0.68 +1.5 18,356 + EX28DRAFT_4354 0.68 -0.0 18,356 + EX28DRAFT_4354 0.68 +0.7 18,366 + EX28DRAFT_4354 0.70 -0.6 18,366 + EX28DRAFT_4354 0.70 -0.5 18,366 + EX28DRAFT_4354 0.70 -0.0 18,366 + EX28DRAFT_4354 0.70 +0.2 18,367 - EX28DRAFT_4354 0.70 +0.4 18,401 - EX28DRAFT_4354 0.75 -0.9 18,403 - EX28DRAFT_4354 0.75 +1.5 18,442 + EX28DRAFT_4354 0.81 +1.2 18,490 - EX28DRAFT_4354 0.88 -0.3 18,510 + +0.0 18,510 + +1.2 18,587 + -1.1 18,587 + -0.9 18,588 - +0.9 18,588 - +0.8 18,644 + +0.3 18,644 + -0.4 18,645 - +0.2 18,652 + +0.0 18,652 + +0.1 18,653 - +0.3 18,653 - -0.3 18,653 - +0.0 18,653 - -0.7 18,672 + -0.4 18,686 - -0.1 18,767 + +0.9 18,836 - EX28DRAFT_4355 0.13 -0.5 18,878 + EX28DRAFT_4355 0.16 -1.3 18,878 + EX28DRAFT_4355 0.16 -1.0 18,878 + EX28DRAFT_4355 0.16 +0.8 18,898 - EX28DRAFT_4355 0.17 +0.4 18,960 - EX28DRAFT_4355 0.22 +0.0 19,039 - EX28DRAFT_4355 0.27 +0.0 19,042 - EX28DRAFT_4355 0.28 +1.0 19,042 - EX28DRAFT_4355 0.28 +0.4 19,274 + EX28DRAFT_4355 0.44 -0.9 19,274 + EX28DRAFT_4355 0.44 -0.4 19,283 + EX28DRAFT_4355 0.44 -0.7 19,284 - EX28DRAFT_4355 0.45 -0.1 19,284 - EX28DRAFT_4355 0.45 -0.0 19,286 + EX28DRAFT_4355 0.45 +0.7 19,286 + EX28DRAFT_4355 0.45 +0.5 19,404 + EX28DRAFT_4355 0.53 -1.6 19,405 - EX28DRAFT_4355 0.53 +0.3 19,405 - EX28DRAFT_4355 0.53 -0.2 19,431 - EX28DRAFT_4355 0.55 -1.2 19,431 - EX28DRAFT_4355 0.55 -0.8 19,451 + EX28DRAFT_4355 0.56 +0.4
Or see this region's nucleotide sequence