Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4348 and EX28DRAFT_4349 are separated by 72 nucleotides EX28DRAFT_4349 and EX28DRAFT_4350 are separated by 111 nucleotides EX28DRAFT_4350 and EX28DRAFT_4351 are separated by 11 nucleotides
EX28DRAFT_4348: EX28DRAFT_4348 - oxygen-independent coproporphyrinogen III oxidase, at 9,912 to 11,285
_4348
EX28DRAFT_4349: EX28DRAFT_4349 - hypothetical protein, at 11,358 to 11,468
_4349
EX28DRAFT_4350: EX28DRAFT_4350 - nitrogen regulation protein NR(I), at 11,580 to 12,992
_4350
EX28DRAFT_4351: EX28DRAFT_4351 - Signal transduction histidine kinase, nitrogen specific, at 13,004 to 14,053
_4351
Position (kb) 11
12
13 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 11.216 kb on + strand at 11.284 kb on - strand at 11.311 kb on + strand at 11.311 kb on + strand at 11.345 kb on + strand at 11.364 kb on - strand at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.500 kb on + strand at 11.500 kb on + strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.520 kb on + strand at 11.575 kb on + strand at 12.042 kb on - strand, within EX28DRAFT_4350 at 12.956 kb on + strand at 13.040 kb on - strand at 13.273 kb on + strand, within EX28DRAFT_4351 at 13.321 kb on + strand, within EX28DRAFT_4351 at 13.392 kb on - strand, within EX28DRAFT_4351 at 13.554 kb on + strand, within EX28DRAFT_4351 at 13.555 kb on - strand, within EX28DRAFT_4351 at 13.882 kb on - strand, within EX28DRAFT_4351 at 13.919 kb on - strand, within EX28DRAFT_4351 at 13.919 kb on - strand, within EX28DRAFT_4351
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 11,216 + -2.0 11,284 - -1.7 11,311 + +0.3 11,311 + -0.5 11,345 + +1.9 11,364 - +2.2 11,448 - EX28DRAFT_4349 0.81 +0.4 11,448 - EX28DRAFT_4349 0.81 +0.1 11,500 + -0.7 11,500 + +0.4 11,501 - +0.7 11,501 - +0.4 11,501 - -0.8 11,501 - +0.5 11,520 + +0.2 11,575 + -0.3 12,042 - EX28DRAFT_4350 0.33 -2.7 12,956 + -2.3 13,040 - +2.4 13,273 + EX28DRAFT_4351 0.26 +2.9 13,321 + EX28DRAFT_4351 0.30 -5.5 13,392 - EX28DRAFT_4351 0.37 -1.5 13,554 + EX28DRAFT_4351 0.52 -2.6 13,555 - EX28DRAFT_4351 0.52 -1.8 13,882 - EX28DRAFT_4351 0.84 -0.5 13,919 - EX28DRAFT_4351 0.87 -2.4 13,919 - EX28DRAFT_4351 0.87 -0.8
Or see this region's nucleotide sequence