Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4325

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4322 and EX28DRAFT_4323 are separated by 197 nucleotidesEX28DRAFT_4323 and EX28DRAFT_4324 are separated by 6 nucleotidesEX28DRAFT_4324 and EX28DRAFT_4325 overlap by 4 nucleotidesEX28DRAFT_4325 and EX28DRAFT_4326 are separated by 116 nucleotides EX28DRAFT_4322: EX28DRAFT_4322 - pseudouridine synthase, at 126,637 to 127,509 _4322 EX28DRAFT_4323: EX28DRAFT_4323 - putative addiction module killer protein, at 127,707 to 128,009 _4323 EX28DRAFT_4324: EX28DRAFT_4324 - probable addiction module antidote protein, at 128,016 to 128,303 _4324 EX28DRAFT_4325: EX28DRAFT_4325 - Na/Pi-cotransporter, at 128,300 to 129,931 _4325 EX28DRAFT_4326: EX28DRAFT_4326 - methionine synthase (B12-dependent) (EC 2.1.1.13), at 130,048 to 133,731 _4326 Position (kb) 128 129 130Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 127.354 kb on - strand, within EX28DRAFT_4322at 127.475 kb on + strandat 127.475 kb on + strandat 127.475 kb on + strandat 127.476 kb on - strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.510 kb on - strandat 127.510 kb on - strandat 127.511 kb on - strandat 127.533 kb on + strandat 127.533 kb on + strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.535 kb on + strandat 127.536 kb on - strandat 127.536 kb on - strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.564 kb on + strandat 127.632 kb on + strandat 127.643 kb on + strandat 127.653 kb on + strandat 127.706 kb on + strandat 127.707 kb on - strandat 127.718 kb on - strandat 127.718 kb on - strandat 127.830 kb on - strand, within EX28DRAFT_4323at 127.848 kb on - strand, within EX28DRAFT_4323at 127.849 kb on + strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.967 kb on + strand, within EX28DRAFT_4323at 128.035 kb on - strandat 128.035 kb on - strandat 128.115 kb on + strand, within EX28DRAFT_4324at 128.238 kb on - strand, within EX28DRAFT_4324at 128.304 kb on + strandat 128.304 kb on + strandat 128.305 kb on - strandat 128.305 kb on - strandat 128.349 kb on + strandat 128.396 kb on + strandat 128.426 kb on - strandat 128.672 kb on - strand, within EX28DRAFT_4325at 128.771 kb on - strand, within EX28DRAFT_4325at 128.781 kb on + strand, within EX28DRAFT_4325at 128.781 kb on + strand, within EX28DRAFT_4325at 128.782 kb on - strand, within EX28DRAFT_4325at 128.788 kb on + strand, within EX28DRAFT_4325at 128.789 kb on - strand, within EX28DRAFT_4325at 128.798 kb on - strand, within EX28DRAFT_4325at 128.799 kb on + strand, within EX28DRAFT_4325at 128.800 kb on - strand, within EX28DRAFT_4325at 128.800 kb on - strand, within EX28DRAFT_4325at 128.800 kb on - strand, within EX28DRAFT_4325at 129.102 kb on + strand, within EX28DRAFT_4325at 129.197 kb on - strand, within EX28DRAFT_4325at 129.250 kb on + strand, within EX28DRAFT_4325at 129.251 kb on - strand, within EX28DRAFT_4325at 129.375 kb on + strand, within EX28DRAFT_4325at 129.375 kb on + strand, within EX28DRAFT_4325at 129.528 kb on - strand, within EX28DRAFT_4325at 129.584 kb on - strand, within EX28DRAFT_4325at 129.656 kb on - strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.660 kb on - strand, within EX28DRAFT_4325at 129.660 kb on - strand, within EX28DRAFT_4325at 129.771 kb on - strandat 129.830 kb on - strandat 129.834 kb on - strandat 129.917 kb on + strandat 129.917 kb on + strandat 129.918 kb on - strandat 129.968 kb on - strandat 129.976 kb on + strandat 129.979 kb on - strandat 129.979 kb on - strandat 129.992 kb on + strandat 129.992 kb on + strandat 130.034 kb on - strandat 130.167 kb on - strandat 130.191 kb on - strandat 130.191 kb on - strandat 130.343 kb on + strandat 130.427 kb on + strand, within EX28DRAFT_4326at 130.428 kb on - strand, within EX28DRAFT_4326at 130.479 kb on + strand, within EX28DRAFT_4326at 130.479 kb on + strand, within EX28DRAFT_4326at 130.563 kb on - strand, within EX28DRAFT_4326at 130.563 kb on - strand, within EX28DRAFT_4326at 130.563 kb on - strand, within EX28DRAFT_4326at 130.573 kb on - strand, within EX28DRAFT_4326at 130.611 kb on - strand, within EX28DRAFT_4326at 130.691 kb on + strand, within EX28DRAFT_4326at 130.853 kb on + strand, within EX28DRAFT_4326at 130.901 kb on + strand, within EX28DRAFT_4326at 130.901 kb on + strand, within EX28DRAFT_4326at 130.902 kb on - strand, within EX28DRAFT_4326at 130.902 kb on - strand, within EX28DRAFT_4326

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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127,354 - EX28DRAFT_4322 0.82 +2.2
127,475 + +0.4
127,475 + -0.5
127,475 + +0.8
127,476 - +0.5
127,509 + +0.6
127,509 + +0.2
127,509 + -0.6
127,509 + +0.8
127,509 + -1.6
127,510 - -0.7
127,510 - -0.1
127,511 - -0.6
127,533 + -0.1
127,533 + +0.0
127,534 - -1.7
127,534 - +0.3
127,534 - -1.9
127,535 + -0.4
127,536 - -0.2
127,536 - +0.2
127,540 + -0.4
127,540 + +0.7
127,540 + +0.3
127,564 + +0.3
127,632 + +0.6
127,643 + -0.4
127,653 + +0.6
127,706 + -0.4
127,707 - +1.0
127,718 - -0.0
127,718 - -0.2
127,830 - EX28DRAFT_4323 0.41 -0.0
127,848 - EX28DRAFT_4323 0.47 -5.2
127,849 + EX28DRAFT_4323 0.47 -0.8
127,850 - EX28DRAFT_4323 0.47 -0.9
127,850 - EX28DRAFT_4323 0.47 +0.3
127,850 - EX28DRAFT_4323 0.47 -0.2
127,850 - EX28DRAFT_4323 0.47 +0.1
127,850 - EX28DRAFT_4323 0.47 +0.8
127,850 - EX28DRAFT_4323 0.47 +0.6
127,850 - EX28DRAFT_4323 0.47 -0.7
127,963 + EX28DRAFT_4323 0.84 -0.1
127,963 + EX28DRAFT_4323 0.84 -0.8
127,963 + EX28DRAFT_4323 0.84 -0.7
127,963 + EX28DRAFT_4323 0.84 +0.1
127,963 + EX28DRAFT_4323 0.84 +0.4
127,963 + EX28DRAFT_4323 0.84 +0.2
127,964 - EX28DRAFT_4323 0.85 +0.5
127,964 - EX28DRAFT_4323 0.85 +0.3
127,964 - EX28DRAFT_4323 0.85 +0.3
127,964 - EX28DRAFT_4323 0.85 -0.7
127,964 - EX28DRAFT_4323 0.85 +0.9
127,964 - EX28DRAFT_4323 0.85 -0.4
127,964 - EX28DRAFT_4323 0.85 +0.2
127,964 - EX28DRAFT_4323 0.85 +0.4
127,967 + EX28DRAFT_4323 0.86 +1.6
128,035 - +0.7
128,035 - -0.4
128,115 + EX28DRAFT_4324 0.34 +1.5
128,238 - EX28DRAFT_4324 0.77 +1.4
128,304 + -0.9
128,304 + -0.9
128,305 - +0.9
128,305 - -0.1
128,349 + -0.4
128,396 + +0.8
128,426 - +0.0
128,672 - EX28DRAFT_4325 0.23 -0.1
128,771 - EX28DRAFT_4325 0.29 -0.2
128,781 + EX28DRAFT_4325 0.29 -0.5
128,781 + EX28DRAFT_4325 0.29 -0.6
128,782 - EX28DRAFT_4325 0.30 +0.4
128,788 + EX28DRAFT_4325 0.30 -0.3
128,789 - EX28DRAFT_4325 0.30 +0.2
128,798 - EX28DRAFT_4325 0.31 -0.4
128,799 + EX28DRAFT_4325 0.31 -0.6
128,800 - EX28DRAFT_4325 0.31 -0.1
128,800 - EX28DRAFT_4325 0.31 +0.1
128,800 - EX28DRAFT_4325 0.31 +0.7
129,102 + EX28DRAFT_4325 0.49 +2.0
129,197 - EX28DRAFT_4325 0.55 -0.1
129,250 + EX28DRAFT_4325 0.58 -1.0
129,251 - EX28DRAFT_4325 0.58 +0.2
129,375 + EX28DRAFT_4325 0.66 -0.2
129,375 + EX28DRAFT_4325 0.66 -0.1
129,528 - EX28DRAFT_4325 0.75 -0.9
129,584 - EX28DRAFT_4325 0.79 -0.8
129,656 - EX28DRAFT_4325 0.83 -0.3
129,659 + EX28DRAFT_4325 0.83 +0.1
129,659 + EX28DRAFT_4325 0.83 +0.5
129,659 + EX28DRAFT_4325 0.83 +0.2
129,659 + EX28DRAFT_4325 0.83 +0.4
129,660 - EX28DRAFT_4325 0.83 -0.5
129,660 - EX28DRAFT_4325 0.83 -0.8
129,771 - +1.7
129,830 - +0.1
129,834 - +0.4
129,917 + -0.6
129,917 + +0.4
129,918 - +0.7
129,968 - -1.6
129,976 + -0.2
129,979 - +0.5
129,979 - -1.3
129,992 + -0.3
129,992 + +0.2
130,034 - -0.8
130,167 - +0.3
130,191 - -0.5
130,191 - -0.0
130,343 + +0.3
130,427 + EX28DRAFT_4326 0.10 +0.0
130,428 - EX28DRAFT_4326 0.10 -0.2
130,479 + EX28DRAFT_4326 0.12 +0.3
130,479 + EX28DRAFT_4326 0.12 +0.3
130,563 - EX28DRAFT_4326 0.14 +0.0
130,563 - EX28DRAFT_4326 0.14 -0.4
130,563 - EX28DRAFT_4326 0.14 -0.2
130,573 - EX28DRAFT_4326 0.14 -0.2
130,611 - EX28DRAFT_4326 0.15 -2.5
130,691 + EX28DRAFT_4326 0.17 +0.1
130,853 + EX28DRAFT_4326 0.22 -0.1
130,901 + EX28DRAFT_4326 0.23 +0.8
130,901 + EX28DRAFT_4326 0.23 -0.2
130,902 - EX28DRAFT_4326 0.23 +0.2
130,902 - EX28DRAFT_4326 0.23 -0.3

Or see this region's nucleotide sequence