Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4321

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4319 and EX28DRAFT_4320 are separated by 93 nucleotidesEX28DRAFT_4320 and EX28DRAFT_4321 are separated by 50 nucleotidesEX28DRAFT_4321 and EX28DRAFT_4322 are separated by 0 nucleotides EX28DRAFT_4319: EX28DRAFT_4319 - aspartate kinase (EC 2.7.2.4), at 124,199 to 125,548 _4319 EX28DRAFT_4320: EX28DRAFT_4320 - Sodium Bile acid symporter family, at 125,642 to 126,313 _4320 EX28DRAFT_4321: EX28DRAFT_4321 - YjbD family (DUF3811), at 126,364 to 126,636 _4321 EX28DRAFT_4322: EX28DRAFT_4322 - pseudouridine synthase, at 126,637 to 127,509 _4322 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.471 kb on + strandat 125.571 kb on + strandat 125.571 kb on + strandat 125.571 kb on + strandat 125.575 kb on + strandat 125.575 kb on + strandat 125.575 kb on + strandat 125.576 kb on - strandat 125.578 kb on - strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.610 kb on - strandat 125.624 kb on + strandat 125.702 kb on + strandat 125.706 kb on - strandat 125.856 kb on - strand, within EX28DRAFT_4320at 125.856 kb on - strand, within EX28DRAFT_4320at 126.046 kb on + strand, within EX28DRAFT_4320at 126.046 kb on + strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.053 kb on - strand, within EX28DRAFT_4320at 126.053 kb on - strand, within EX28DRAFT_4320at 126.106 kb on + strand, within EX28DRAFT_4320at 126.107 kb on - strand, within EX28DRAFT_4320at 126.132 kb on + strand, within EX28DRAFT_4320at 126.169 kb on + strand, within EX28DRAFT_4320at 126.255 kb on - strandat 126.311 kb on + strandat 126.499 kb on + strand, within EX28DRAFT_4321at 126.500 kb on - strand, within EX28DRAFT_4321at 126.508 kb on - strand, within EX28DRAFT_4321at 126.571 kb on + strand, within EX28DRAFT_4321at 126.571 kb on + strand, within EX28DRAFT_4321at 126.572 kb on - strand, within EX28DRAFT_4321at 126.885 kb on + strand, within EX28DRAFT_4322at 126.886 kb on - strand, within EX28DRAFT_4322at 127.100 kb on + strand, within EX28DRAFT_4322at 127.100 kb on + strand, within EX28DRAFT_4322at 127.101 kb on - strand, within EX28DRAFT_4322at 127.101 kb on - strand, within EX28DRAFT_4322at 127.212 kb on + strand, within EX28DRAFT_4322at 127.212 kb on + strand, within EX28DRAFT_4322at 127.213 kb on - strand, within EX28DRAFT_4322at 127.354 kb on - strand, within EX28DRAFT_4322at 127.475 kb on + strandat 127.475 kb on + strandat 127.475 kb on + strandat 127.476 kb on - strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.510 kb on - strandat 127.510 kb on - strandat 127.511 kb on - strandat 127.533 kb on + strandat 127.533 kb on + strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.535 kb on + strandat 127.536 kb on - strandat 127.536 kb on - strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.564 kb on + strandat 127.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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125,471 + -0.7
125,571 + -0.2
125,571 + +0.9
125,571 + -0.4
125,575 + -0.3
125,575 + +0.8
125,575 + -0.1
125,576 - +0.2
125,578 - -0.2
125,609 + -0.1
125,609 + +0.4
125,609 + -0.4
125,609 + -0.5
125,609 + -0.1
125,609 + +1.0
125,610 - -0.6
125,624 + -0.0
125,702 + -2.2
125,706 - -0.4
125,856 - EX28DRAFT_4320 0.32 +0.5
125,856 - EX28DRAFT_4320 0.32 -0.3
126,046 + EX28DRAFT_4320 0.60 +1.1
126,046 + EX28DRAFT_4320 0.60 -0.7
126,047 - EX28DRAFT_4320 0.60 -0.1
126,047 - EX28DRAFT_4320 0.60 +0.0
126,047 - EX28DRAFT_4320 0.60 -0.5
126,047 - EX28DRAFT_4320 0.60 +1.7
126,053 - EX28DRAFT_4320 0.61 -0.4
126,053 - EX28DRAFT_4320 0.61 +0.9
126,106 + EX28DRAFT_4320 0.69 +0.7
126,107 - EX28DRAFT_4320 0.69 -0.8
126,132 + EX28DRAFT_4320 0.73 -0.2
126,169 + EX28DRAFT_4320 0.78 -0.1
126,255 - -0.4
126,311 + +0.6
126,499 + EX28DRAFT_4321 0.49 -0.1
126,500 - EX28DRAFT_4321 0.50 +0.7
126,508 - EX28DRAFT_4321 0.53 -0.5
126,571 + EX28DRAFT_4321 0.76 -0.3
126,571 + EX28DRAFT_4321 0.76 -1.4
126,572 - EX28DRAFT_4321 0.76 +0.0
126,885 + EX28DRAFT_4322 0.28 +0.2
126,886 - EX28DRAFT_4322 0.29 -0.5
127,100 + EX28DRAFT_4322 0.53 +2.4
127,100 + EX28DRAFT_4322 0.53 +0.3
127,101 - EX28DRAFT_4322 0.53 +0.2
127,101 - EX28DRAFT_4322 0.53 -0.0
127,212 + EX28DRAFT_4322 0.66 -0.7
127,212 + EX28DRAFT_4322 0.66 +0.1
127,213 - EX28DRAFT_4322 0.66 +1.2
127,354 - EX28DRAFT_4322 0.82 +2.2
127,475 + +0.4
127,475 + -0.5
127,475 + +0.8
127,476 - +0.5
127,509 + +0.6
127,509 + +0.2
127,509 + -0.6
127,509 + +0.8
127,509 + -1.6
127,510 - -0.7
127,510 - -0.1
127,511 - -0.6
127,533 + -0.1
127,533 + +0.0
127,534 - -1.7
127,534 - +0.3
127,534 - -1.9
127,535 + -0.4
127,536 - -0.2
127,536 - +0.2
127,540 + -0.4
127,540 + +0.7
127,540 + +0.3
127,564 + +0.3
127,632 + +0.6

Or see this region's nucleotide sequence