Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4315

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4314 and EX28DRAFT_4315 overlap by 1 nucleotidesEX28DRAFT_4315 and EX28DRAFT_4316 overlap by 4 nucleotidesEX28DRAFT_4316 and EX28DRAFT_4317 are separated by 63 nucleotides EX28DRAFT_4314: EX28DRAFT_4314 - Bacterial putative lipoprotein (DUF940), at 118,033 to 120,129 _4314 EX28DRAFT_4315: EX28DRAFT_4315 - Capsule biosynthesis GfcC, at 120,129 to 120,866 _4315 EX28DRAFT_4316: EX28DRAFT_4316 - Group 4 capsule polysaccharide formation lipoprotein gfcB, at 120,863 to 121,501 _4316 EX28DRAFT_4317: EX28DRAFT_4317 - Exopolysaccharide production protein YjbE, at 121,565 to 121,807 _4317 Position (kb) 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 119.141 kb on + strand, within EX28DRAFT_4314at 119.141 kb on + strand, within EX28DRAFT_4314at 119.141 kb on + strand, within EX28DRAFT_4314at 119.142 kb on - strand, within EX28DRAFT_4314at 119.193 kb on - strand, within EX28DRAFT_4314at 119.285 kb on + strand, within EX28DRAFT_4314at 119.286 kb on - strand, within EX28DRAFT_4314at 119.406 kb on + strand, within EX28DRAFT_4314at 119.482 kb on + strand, within EX28DRAFT_4314at 119.482 kb on + strand, within EX28DRAFT_4314at 119.505 kb on - strand, within EX28DRAFT_4314at 119.505 kb on - strand, within EX28DRAFT_4314at 119.576 kb on + strand, within EX28DRAFT_4314at 119.577 kb on - strand, within EX28DRAFT_4314at 119.597 kb on + strand, within EX28DRAFT_4314at 119.597 kb on + strand, within EX28DRAFT_4314at 119.597 kb on + strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.711 kb on + strand, within EX28DRAFT_4314at 119.711 kb on + strand, within EX28DRAFT_4314at 119.712 kb on - strand, within EX28DRAFT_4314at 119.712 kb on - strand, within EX28DRAFT_4314at 119.712 kb on - strand, within EX28DRAFT_4314at 119.778 kb on - strand, within EX28DRAFT_4314at 119.825 kb on + strand, within EX28DRAFT_4314at 119.861 kb on + strand, within EX28DRAFT_4314at 119.862 kb on - strand, within EX28DRAFT_4314at 119.883 kb on + strand, within EX28DRAFT_4314at 119.914 kb on + strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.934 kb on - strandat 119.936 kb on + strandat 119.937 kb on - strandat 119.961 kb on - strandat 119.964 kb on + strandat 119.971 kb on - strandat 120.013 kb on + strandat 120.111 kb on - strandat 120.116 kb on + strandat 120.116 kb on + strandat 120.185 kb on - strandat 120.239 kb on + strand, within EX28DRAFT_4315at 120.240 kb on - strand, within EX28DRAFT_4315at 120.258 kb on - strand, within EX28DRAFT_4315at 120.266 kb on - strand, within EX28DRAFT_4315at 120.316 kb on + strand, within EX28DRAFT_4315at 120.458 kb on + strand, within EX28DRAFT_4315at 120.458 kb on + strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.460 kb on + strand, within EX28DRAFT_4315at 120.921 kb on + strandat 121.102 kb on + strand, within EX28DRAFT_4316at 121.103 kb on - strand, within EX28DRAFT_4316at 121.103 kb on - strand, within EX28DRAFT_4316at 121.344 kb on + strand, within EX28DRAFT_4316at 121.345 kb on - strand, within EX28DRAFT_4316at 121.345 kb on - strand, within EX28DRAFT_4316at 121.356 kb on + strand, within EX28DRAFT_4316at 121.356 kb on + strand, within EX28DRAFT_4316at 121.391 kb on + strand, within EX28DRAFT_4316at 121.392 kb on - strand, within EX28DRAFT_4316at 121.392 kb on - strand, within EX28DRAFT_4316at 121.441 kb on + strandat 121.526 kb on - strandat 121.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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119,141 + EX28DRAFT_4314 0.53 +0.1
119,141 + EX28DRAFT_4314 0.53 +0.3
119,141 + EX28DRAFT_4314 0.53 -0.3
119,142 - EX28DRAFT_4314 0.53 +0.7
119,193 - EX28DRAFT_4314 0.55 +0.8
119,285 + EX28DRAFT_4314 0.60 -0.1
119,286 - EX28DRAFT_4314 0.60 +0.7
119,406 + EX28DRAFT_4314 0.65 +0.2
119,482 + EX28DRAFT_4314 0.69 +1.1
119,482 + EX28DRAFT_4314 0.69 -0.6
119,505 - EX28DRAFT_4314 0.70 +0.3
119,505 - EX28DRAFT_4314 0.70 -1.0
119,576 + EX28DRAFT_4314 0.74 -0.3
119,577 - EX28DRAFT_4314 0.74 -0.2
119,597 + EX28DRAFT_4314 0.75 -0.0
119,597 + EX28DRAFT_4314 0.75 +0.0
119,597 + EX28DRAFT_4314 0.75 +0.3
119,598 - EX28DRAFT_4314 0.75 +0.1
119,598 - EX28DRAFT_4314 0.75 -0.2
119,598 - EX28DRAFT_4314 0.75 -0.3
119,598 - EX28DRAFT_4314 0.75 -0.2
119,598 - EX28DRAFT_4314 0.75 -0.9
119,711 + EX28DRAFT_4314 0.80 -0.9
119,711 + EX28DRAFT_4314 0.80 +0.2
119,712 - EX28DRAFT_4314 0.80 -0.4
119,712 - EX28DRAFT_4314 0.80 -1.6
119,712 - EX28DRAFT_4314 0.80 -1.4
119,778 - EX28DRAFT_4314 0.83 -0.0
119,825 + EX28DRAFT_4314 0.85 +0.5
119,861 + EX28DRAFT_4314 0.87 -1.1
119,862 - EX28DRAFT_4314 0.87 -0.2
119,883 + EX28DRAFT_4314 0.88 +0.3
119,914 + EX28DRAFT_4314 0.90 +1.7
119,915 - EX28DRAFT_4314 0.90 -2.1
119,915 - EX28DRAFT_4314 0.90 +0.2
119,915 - EX28DRAFT_4314 0.90 +0.1
119,934 - -0.1
119,936 + +0.1
119,937 - -0.0
119,961 - +0.1
119,964 + -2.4
119,971 - +0.6
120,013 + +0.1
120,111 - +0.1
120,116 + -0.3
120,116 + +0.3
120,185 - +0.1
120,239 + EX28DRAFT_4315 0.15 +0.6
120,240 - EX28DRAFT_4315 0.15 +0.3
120,258 - EX28DRAFT_4315 0.17 +0.0
120,266 - EX28DRAFT_4315 0.19 +0.1
120,316 + EX28DRAFT_4315 0.25 -0.2
120,458 + EX28DRAFT_4315 0.45 -0.5
120,458 + EX28DRAFT_4315 0.45 +0.1
120,459 - EX28DRAFT_4315 0.45 +2.2
120,459 - EX28DRAFT_4315 0.45 +0.4
120,459 - EX28DRAFT_4315 0.45 +0.2
120,460 + EX28DRAFT_4315 0.45 -0.1
120,921 + +0.3
121,102 + EX28DRAFT_4316 0.37 -0.1
121,103 - EX28DRAFT_4316 0.38 +0.5
121,103 - EX28DRAFT_4316 0.38 -0.7
121,344 + EX28DRAFT_4316 0.75 -1.1
121,345 - EX28DRAFT_4316 0.75 +1.9
121,345 - EX28DRAFT_4316 0.75 -0.3
121,356 + EX28DRAFT_4316 0.77 -0.0
121,356 + EX28DRAFT_4316 0.77 +0.2
121,391 + EX28DRAFT_4316 0.83 -0.9
121,392 - EX28DRAFT_4316 0.83 +0.6
121,392 - EX28DRAFT_4316 0.83 +0.1
121,441 + +0.5
121,526 - +0.7
121,796 + -0.4

Or see this region's nucleotide sequence