Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4313

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4311 and EX28DRAFT_4312 are separated by 97 nucleotidesEX28DRAFT_4312 and EX28DRAFT_4313 are separated by 96 nucleotidesEX28DRAFT_4313 and EX28DRAFT_4314 are separated by 77 nucleotides EX28DRAFT_4311: EX28DRAFT_4311 - ABC-type maltose transport systems, permease component, at 116,008 to 116,898 _4311 EX28DRAFT_4312: EX28DRAFT_4312 - Predicted membrane protein, at 116,996 to 117,406 _4312 EX28DRAFT_4313: EX28DRAFT_4313 - Bacterial transferase hexapeptide (six repeats)/Hexapeptide repeat of succinyl-transferase, at 117,503 to 117,955 _4313 EX28DRAFT_4314: EX28DRAFT_4314 - Bacterial putative lipoprotein (DUF940), at 118,033 to 120,129 _4314 Position (kb) 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 116.528 kb on + strand, within EX28DRAFT_4311at 116.529 kb on - strand, within EX28DRAFT_4311at 116.529 kb on - strand, within EX28DRAFT_4311at 116.529 kb on - strand, within EX28DRAFT_4311at 116.660 kb on + strand, within EX28DRAFT_4311at 116.665 kb on - strand, within EX28DRAFT_4311at 116.665 kb on - strand, within EX28DRAFT_4311at 116.665 kb on - strand, within EX28DRAFT_4311at 116.714 kb on + strand, within EX28DRAFT_4311at 116.715 kb on - strand, within EX28DRAFT_4311at 116.734 kb on + strand, within EX28DRAFT_4311at 116.734 kb on + strand, within EX28DRAFT_4311at 116.747 kb on + strand, within EX28DRAFT_4311at 116.751 kb on + strand, within EX28DRAFT_4311at 116.751 kb on + strand, within EX28DRAFT_4311at 116.752 kb on - strand, within EX28DRAFT_4311at 116.761 kb on + strand, within EX28DRAFT_4311at 116.762 kb on - strand, within EX28DRAFT_4311at 116.896 kb on + strandat 116.935 kb on - strandat 116.940 kb on + strandat 116.940 kb on + strandat 116.940 kb on + strandat 116.940 kb on + strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.945 kb on + strandat 116.945 kb on + strandat 117.066 kb on + strand, within EX28DRAFT_4312at 117.067 kb on - strand, within EX28DRAFT_4312at 117.135 kb on + strand, within EX28DRAFT_4312at 117.145 kb on - strand, within EX28DRAFT_4312at 117.145 kb on - strand, within EX28DRAFT_4312at 117.177 kb on + strand, within EX28DRAFT_4312at 117.207 kb on + strand, within EX28DRAFT_4312at 117.243 kb on + strand, within EX28DRAFT_4312at 117.243 kb on + strand, within EX28DRAFT_4312at 117.244 kb on - strand, within EX28DRAFT_4312at 117.273 kb on - strand, within EX28DRAFT_4312at 117.373 kb on + strandat 117.406 kb on + strandat 117.407 kb on - strandat 117.407 kb on - strandat 117.407 kb on - strandat 117.439 kb on + strandat 117.439 kb on + strandat 117.440 kb on - strandat 117.478 kb on + strandat 117.478 kb on + strandat 117.479 kb on - strandat 117.479 kb on - strandat 117.486 kb on - strandat 117.486 kb on - strandat 117.489 kb on + strandat 117.489 kb on + strandat 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.561 kb on - strand, within EX28DRAFT_4313at 117.561 kb on - strand, within EX28DRAFT_4313at 117.579 kb on - strand, within EX28DRAFT_4313at 117.603 kb on + strand, within EX28DRAFT_4313at 117.690 kb on - strand, within EX28DRAFT_4313at 117.690 kb on - strand, within EX28DRAFT_4313at 117.697 kb on + strand, within EX28DRAFT_4313at 117.698 kb on - strand, within EX28DRAFT_4313at 117.704 kb on - strand, within EX28DRAFT_4313at 117.745 kb on + strand, within EX28DRAFT_4313at 117.745 kb on + strand, within EX28DRAFT_4313at 117.746 kb on - strand, within EX28DRAFT_4313at 117.794 kb on - strand, within EX28DRAFT_4313at 117.993 kb on + strandat 117.993 kb on + strandat 117.994 kb on - strandat 118.044 kb on + strandat 118.045 kb on - strandat 118.070 kb on + strandat 118.083 kb on + strandat 118.083 kb on + strandat 118.084 kb on - strandat 118.285 kb on - strand, within EX28DRAFT_4314at 118.291 kb on - strand, within EX28DRAFT_4314at 118.407 kb on - strand, within EX28DRAFT_4314at 118.461 kb on - strand, within EX28DRAFT_4314at 118.488 kb on + strand, within EX28DRAFT_4314at 118.505 kb on + strand, within EX28DRAFT_4314at 118.557 kb on - strand, within EX28DRAFT_4314at 118.557 kb on - strand, within EX28DRAFT_4314at 118.587 kb on - strand, within EX28DRAFT_4314at 118.595 kb on + strand, within EX28DRAFT_4314at 118.596 kb on - strand, within EX28DRAFT_4314at 118.619 kb on + strand, within EX28DRAFT_4314at 118.620 kb on - strand, within EX28DRAFT_4314at 118.620 kb on - strand, within EX28DRAFT_4314at 118.620 kb on - strand, within EX28DRAFT_4314at 118.694 kb on + strand, within EX28DRAFT_4314at 118.694 kb on + strand, within EX28DRAFT_4314at 118.695 kb on - strand, within EX28DRAFT_4314at 118.695 kb on - strand, within EX28DRAFT_4314at 118.800 kb on - strand, within EX28DRAFT_4314at 118.805 kb on + strand, within EX28DRAFT_4314at 118.805 kb on + strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.880 kb on + strand, within EX28DRAFT_4314at 118.880 kb on + strand, within EX28DRAFT_4314at 118.880 kb on + strand, within EX28DRAFT_4314at 118.881 kb on - strand, within EX28DRAFT_4314

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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116,528 + EX28DRAFT_4311 0.58 -0.3
116,529 - EX28DRAFT_4311 0.58 +0.5
116,529 - EX28DRAFT_4311 0.58 -2.5
116,529 - EX28DRAFT_4311 0.58 -0.2
116,660 + EX28DRAFT_4311 0.73 +0.3
116,665 - EX28DRAFT_4311 0.74 +0.4
116,665 - EX28DRAFT_4311 0.74 -0.6
116,665 - EX28DRAFT_4311 0.74 +0.7
116,714 + EX28DRAFT_4311 0.79 +0.5
116,715 - EX28DRAFT_4311 0.79 -0.1
116,734 + EX28DRAFT_4311 0.81 +0.2
116,734 + EX28DRAFT_4311 0.81 -0.3
116,747 + EX28DRAFT_4311 0.83 -0.5
116,751 + EX28DRAFT_4311 0.83 -0.2
116,751 + EX28DRAFT_4311 0.83 +0.0
116,752 - EX28DRAFT_4311 0.84 -0.0
116,761 + EX28DRAFT_4311 0.85 +0.4
116,762 - EX28DRAFT_4311 0.85 +0.7
116,896 + -0.6
116,935 - -0.5
116,940 + -0.1
116,940 + +0.4
116,940 + +0.0
116,940 + -0.0
116,941 - -0.6
116,941 - +0.3
116,941 - -0.5
116,941 - -1.6
116,941 - -0.2
116,945 + +0.3
116,945 + -0.6
117,066 + EX28DRAFT_4312 0.17 +1.3
117,067 - EX28DRAFT_4312 0.17 -0.0
117,135 + EX28DRAFT_4312 0.34 +0.8
117,145 - EX28DRAFT_4312 0.36 -0.7
117,145 - EX28DRAFT_4312 0.36 -1.0
117,177 + EX28DRAFT_4312 0.44 +0.1
117,207 + EX28DRAFT_4312 0.51 -0.8
117,243 + EX28DRAFT_4312 0.60 +0.5
117,243 + EX28DRAFT_4312 0.60 -0.2
117,244 - EX28DRAFT_4312 0.60 +0.2
117,273 - EX28DRAFT_4312 0.67 +0.1
117,373 + +0.6
117,406 + -1.7
117,407 - +0.0
117,407 - +1.0
117,407 - -1.1
117,439 + -0.2
117,439 + +0.4
117,440 - +0.3
117,478 + +0.1
117,478 + -0.2
117,479 - +0.8
117,479 - +0.2
117,486 - +2.8
117,486 - -1.5
117,489 + +0.1
117,489 + -0.1
117,558 + EX28DRAFT_4313 0.12 -1.4
117,558 + EX28DRAFT_4313 0.12 -0.3
117,558 + EX28DRAFT_4313 0.12 -0.3
117,558 + EX28DRAFT_4313 0.12 -0.2
117,558 + EX28DRAFT_4313 0.12 +1.2
117,559 - EX28DRAFT_4313 0.12 -1.0
117,559 - EX28DRAFT_4313 0.12 -1.5
117,559 - EX28DRAFT_4313 0.12 -0.8
117,560 + EX28DRAFT_4313 0.13 -0.3
117,560 + EX28DRAFT_4313 0.13 -0.2
117,560 + EX28DRAFT_4313 0.13 -0.6
117,561 - EX28DRAFT_4313 0.13 -0.6
117,561 - EX28DRAFT_4313 0.13 +1.2
117,579 - EX28DRAFT_4313 0.17 -2.4
117,603 + EX28DRAFT_4313 0.22 -3.2
117,690 - EX28DRAFT_4313 0.41 +0.5
117,690 - EX28DRAFT_4313 0.41 +0.2
117,697 + EX28DRAFT_4313 0.43 -0.2
117,698 - EX28DRAFT_4313 0.43 +0.2
117,704 - EX28DRAFT_4313 0.44 +0.3
117,745 + EX28DRAFT_4313 0.53 +0.3
117,745 + EX28DRAFT_4313 0.53 -0.5
117,746 - EX28DRAFT_4313 0.54 -0.9
117,794 - EX28DRAFT_4313 0.64 -0.5
117,993 + +0.2
117,993 + -0.1
117,994 - -1.6
118,044 + +0.2
118,045 - -1.3
118,070 + +1.1
118,083 + -0.5
118,083 + +0.4
118,084 - +1.0
118,285 - EX28DRAFT_4314 0.12 +0.6
118,291 - EX28DRAFT_4314 0.12 +0.5
118,407 - EX28DRAFT_4314 0.18 -1.7
118,461 - EX28DRAFT_4314 0.20 -0.3
118,488 + EX28DRAFT_4314 0.22 -0.4
118,505 + EX28DRAFT_4314 0.23 -0.5
118,557 - EX28DRAFT_4314 0.25 +0.5
118,557 - EX28DRAFT_4314 0.25 +0.2
118,587 - EX28DRAFT_4314 0.26 +0.4
118,595 + EX28DRAFT_4314 0.27 +0.4
118,596 - EX28DRAFT_4314 0.27 -0.2
118,619 + EX28DRAFT_4314 0.28 -0.1
118,620 - EX28DRAFT_4314 0.28 -0.5
118,620 - EX28DRAFT_4314 0.28 -0.4
118,620 - EX28DRAFT_4314 0.28 +0.0
118,694 + EX28DRAFT_4314 0.32 +0.3
118,694 + EX28DRAFT_4314 0.32 +0.8
118,695 - EX28DRAFT_4314 0.32 -0.9
118,695 - EX28DRAFT_4314 0.32 -0.1
118,800 - EX28DRAFT_4314 0.37 +0.5
118,805 + EX28DRAFT_4314 0.37 -2.1
118,805 + EX28DRAFT_4314 0.37 -0.2
118,806 - EX28DRAFT_4314 0.37 +2.0
118,806 - EX28DRAFT_4314 0.37 +0.7
118,806 - EX28DRAFT_4314 0.37 -0.7
118,806 - EX28DRAFT_4314 0.37 -0.0
118,880 + EX28DRAFT_4314 0.40 -0.1
118,880 + EX28DRAFT_4314 0.40 -0.8
118,880 + EX28DRAFT_4314 0.40 +0.2
118,881 - EX28DRAFT_4314 0.40 +0.5

Or see this region's nucleotide sequence