Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4293

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4290 and EX28DRAFT_4291 are separated by 152 nucleotidesEX28DRAFT_4291 and EX28DRAFT_4292 are separated by 119 nucleotidesEX28DRAFT_4292 and EX28DRAFT_4293 are separated by 116 nucleotidesEX28DRAFT_4293 and EX28DRAFT_4294 are separated by 203 nucleotides EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220 _4290 EX28DRAFT_4291: EX28DRAFT_4291 - hypothetical protein, at 95,373 to 95,525 _4291 EX28DRAFT_4292: EX28DRAFT_4292 - Acetyltransferase (GNAT) domain, at 95,645 to 96,034 _4292 EX28DRAFT_4293: EX28DRAFT_4293 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 96,151 to 97,245 _4293 EX28DRAFT_4294: EX28DRAFT_4294 - 4-aminobutyrate aminotransferase, prokaryotic type, at 97,449 to 98,714 _4294 Position (kb) 96 97 98Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 95.262 kb on + strandat 95.263 kb on - strandat 95.271 kb on + strandat 95.272 kb on - strandat 95.396 kb on - strand, within EX28DRAFT_4291at 95.597 kb on + strandat 95.597 kb on + strandat 95.598 kb on - strandat 95.606 kb on + strandat 95.617 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.643 kb on + strandat 95.720 kb on + strand, within EX28DRAFT_4292at 95.721 kb on - strand, within EX28DRAFT_4292at 95.762 kb on + strand, within EX28DRAFT_4292at 95.762 kb on + strand, within EX28DRAFT_4292at 95.777 kb on - strand, within EX28DRAFT_4292at 95.883 kb on - strand, within EX28DRAFT_4292at 95.887 kb on - strand, within EX28DRAFT_4292at 95.887 kb on - strand, within EX28DRAFT_4292at 96.345 kb on - strand, within EX28DRAFT_4293at 96.345 kb on - strand, within EX28DRAFT_4293at 96.405 kb on + strand, within EX28DRAFT_4293at 96.405 kb on + strand, within EX28DRAFT_4293at 96.405 kb on + strand, within EX28DRAFT_4293at 96.590 kb on + strand, within EX28DRAFT_4293at 96.738 kb on - strand, within EX28DRAFT_4293at 96.795 kb on - strand, within EX28DRAFT_4293at 96.907 kb on - strand, within EX28DRAFT_4293at 96.920 kb on + strand, within EX28DRAFT_4293at 96.920 kb on + strand, within EX28DRAFT_4293at 96.921 kb on - strand, within EX28DRAFT_4293at 96.971 kb on + strand, within EX28DRAFT_4293at 96.971 kb on + strand, within EX28DRAFT_4293at 96.971 kb on + strand, within EX28DRAFT_4293at 96.972 kb on - strand, within EX28DRAFT_4293at 96.972 kb on - strand, within EX28DRAFT_4293at 97.041 kb on - strand, within EX28DRAFT_4293at 97.080 kb on + strand, within EX28DRAFT_4293at 97.080 kb on + strand, within EX28DRAFT_4293at 97.087 kb on - strand, within EX28DRAFT_4293at 97.215 kb on + strandat 97.216 kb on - strandat 97.279 kb on + strandat 97.280 kb on - strandat 97.407 kb on + strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.415 kb on - strandat 97.451 kb on - strandat 97.473 kb on - strandat 97.687 kb on + strand, within EX28DRAFT_4294at 97.689 kb on - strand, within EX28DRAFT_4294at 97.825 kb on + strand, within EX28DRAFT_4294at 97.825 kb on + strand, within EX28DRAFT_4294at 98.055 kb on - strand, within EX28DRAFT_4294at 98.145 kb on - strand, within EX28DRAFT_4294at 98.218 kb on + strand, within EX28DRAFT_4294at 98.218 kb on + strand, within EX28DRAFT_4294

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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95,262 + +1.2
95,263 - -2.3
95,271 + +2.3
95,272 - -2.7
95,396 - EX28DRAFT_4291 0.15 -3.6
95,597 + +0.3
95,597 + +0.8
95,598 - -0.9
95,606 + -2.5
95,617 + -0.4
95,639 + -0.2
95,639 + -3.4
95,639 + -2.0
95,639 + -0.4
95,639 + -1.0
95,643 + -1.0
95,720 + EX28DRAFT_4292 0.19 -2.8
95,721 - EX28DRAFT_4292 0.19 -5.1
95,762 + EX28DRAFT_4292 0.30 -2.3
95,762 + EX28DRAFT_4292 0.30 -0.2
95,777 - EX28DRAFT_4292 0.34 -4.4
95,883 - EX28DRAFT_4292 0.61 -4.2
95,887 - EX28DRAFT_4292 0.62 -4.3
95,887 - EX28DRAFT_4292 0.62 -4.3
96,345 - EX28DRAFT_4293 0.18 +1.1
96,345 - EX28DRAFT_4293 0.18 +1.1
96,405 + EX28DRAFT_4293 0.23 +1.1
96,405 + EX28DRAFT_4293 0.23 +0.8
96,405 + EX28DRAFT_4293 0.23 +1.6
96,590 + EX28DRAFT_4293 0.40 +2.2
96,738 - EX28DRAFT_4293 0.54 +1.5
96,795 - EX28DRAFT_4293 0.59 +1.5
96,907 - EX28DRAFT_4293 0.69 +0.9
96,920 + EX28DRAFT_4293 0.70 +0.8
96,920 + EX28DRAFT_4293 0.70 +1.1
96,921 - EX28DRAFT_4293 0.70 +0.7
96,971 + EX28DRAFT_4293 0.75 +1.2
96,971 + EX28DRAFT_4293 0.75 +1.6
96,971 + EX28DRAFT_4293 0.75 +1.5
96,972 - EX28DRAFT_4293 0.75 +1.4
96,972 - EX28DRAFT_4293 0.75 +2.0
97,041 - EX28DRAFT_4293 0.81 +1.4
97,080 + EX28DRAFT_4293 0.85 +1.4
97,080 + EX28DRAFT_4293 0.85 +1.4
97,087 - EX28DRAFT_4293 0.85 +1.1
97,215 + +0.5
97,216 - +1.9
97,279 + +1.7
97,280 - +0.6
97,407 + +0.1
97,409 + -0.3
97,409 + +0.5
97,409 + -0.8
97,409 + -0.7
97,410 - +0.3
97,410 - -0.4
97,415 - -0.7
97,451 - +0.3
97,473 - +0.1
97,687 + EX28DRAFT_4294 0.19 -0.1
97,689 - EX28DRAFT_4294 0.19 -0.1
97,825 + EX28DRAFT_4294 0.30 -0.5
97,825 + EX28DRAFT_4294 0.30 -1.1
98,055 - EX28DRAFT_4294 0.48 -1.0
98,145 - EX28DRAFT_4294 0.55 -0.2
98,218 + EX28DRAFT_4294 0.61 +0.2
98,218 + EX28DRAFT_4294 0.61 +0.2

Or see this region's nucleotide sequence