Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4290 and EX28DRAFT_4291 are separated by 152 nucleotides EX28DRAFT_4291 and EX28DRAFT_4292 are separated by 119 nucleotides EX28DRAFT_4292 and EX28DRAFT_4293 are separated by 116 nucleotides
EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220
_4290
EX28DRAFT_4291: EX28DRAFT_4291 - hypothetical protein, at 95,373 to 95,525
_4291
EX28DRAFT_4292: EX28DRAFT_4292 - Acetyltransferase (GNAT) domain, at 95,645 to 96,034
_4292
EX28DRAFT_4293: EX28DRAFT_4293 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 96,151 to 97,245
_4293
Position (kb) 95
96
97 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 94.760 kb on + strand, within EX28DRAFT_4290 at 94.760 kb on + strand, within EX28DRAFT_4290 at 94.761 kb on - strand, within EX28DRAFT_4290 at 94.761 kb on - strand, within EX28DRAFT_4290 at 94.886 kb on + strand, within EX28DRAFT_4290 at 94.887 kb on - strand, within EX28DRAFT_4290 at 94.937 kb on + strand, within EX28DRAFT_4290 at 95.006 kb on + strand, within EX28DRAFT_4290 at 95.262 kb on + strand at 95.263 kb on - strand at 95.271 kb on + strand at 95.272 kb on - strand at 95.396 kb on - strand, within EX28DRAFT_4291 at 95.597 kb on + strand at 95.597 kb on + strand at 95.598 kb on - strand at 95.606 kb on + strand at 95.617 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.643 kb on + strand at 95.720 kb on + strand, within EX28DRAFT_4292 at 95.721 kb on - strand, within EX28DRAFT_4292 at 95.762 kb on + strand, within EX28DRAFT_4292 at 95.762 kb on + strand, within EX28DRAFT_4292 at 95.777 kb on - strand, within EX28DRAFT_4292 at 95.883 kb on - strand, within EX28DRAFT_4292 at 95.887 kb on - strand, within EX28DRAFT_4292 at 95.887 kb on - strand, within EX28DRAFT_4292 at 96.345 kb on - strand, within EX28DRAFT_4293 at 96.345 kb on - strand, within EX28DRAFT_4293 at 96.405 kb on + strand, within EX28DRAFT_4293 at 96.405 kb on + strand, within EX28DRAFT_4293 at 96.405 kb on + strand, within EX28DRAFT_4293 at 96.590 kb on + strand, within EX28DRAFT_4293 at 96.738 kb on - strand, within EX28DRAFT_4293 at 96.795 kb on - strand, within EX28DRAFT_4293 at 96.907 kb on - strand, within EX28DRAFT_4293 at 96.920 kb on + strand, within EX28DRAFT_4293 at 96.920 kb on + strand, within EX28DRAFT_4293 at 96.921 kb on - strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.972 kb on - strand, within EX28DRAFT_4293 at 96.972 kb on - strand, within EX28DRAFT_4293
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 94,760 + EX28DRAFT_4290 0.58 +1.3 94,760 + EX28DRAFT_4290 0.58 +0.9 94,761 - EX28DRAFT_4290 0.59 +0.5 94,761 - EX28DRAFT_4290 0.59 +1.1 94,886 + EX28DRAFT_4290 0.70 +1.8 94,887 - EX28DRAFT_4290 0.70 +1.1 94,937 + EX28DRAFT_4290 0.74 +1.8 95,006 + EX28DRAFT_4290 0.81 +1.5 95,262 + +1.2 95,263 - -2.3 95,271 + +2.3 95,272 - -2.7 95,396 - EX28DRAFT_4291 0.15 -3.6 95,597 + +0.3 95,597 + +0.8 95,598 - -0.9 95,606 + -2.5 95,617 + -0.4 95,639 + -0.2 95,639 + -3.4 95,639 + -2.0 95,639 + -0.4 95,639 + -1.0 95,643 + -1.0 95,720 + EX28DRAFT_4292 0.19 -2.8 95,721 - EX28DRAFT_4292 0.19 -5.1 95,762 + EX28DRAFT_4292 0.30 -2.3 95,762 + EX28DRAFT_4292 0.30 -0.2 95,777 - EX28DRAFT_4292 0.34 -4.4 95,883 - EX28DRAFT_4292 0.61 -4.2 95,887 - EX28DRAFT_4292 0.62 -4.3 95,887 - EX28DRAFT_4292 0.62 -4.3 96,345 - EX28DRAFT_4293 0.18 +1.1 96,345 - EX28DRAFT_4293 0.18 +1.1 96,405 + EX28DRAFT_4293 0.23 +1.1 96,405 + EX28DRAFT_4293 0.23 +0.8 96,405 + EX28DRAFT_4293 0.23 +1.6 96,590 + EX28DRAFT_4293 0.40 +2.2 96,738 - EX28DRAFT_4293 0.54 +1.5 96,795 - EX28DRAFT_4293 0.59 +1.5 96,907 - EX28DRAFT_4293 0.69 +0.9 96,920 + EX28DRAFT_4293 0.70 +0.8 96,920 + EX28DRAFT_4293 0.70 +1.1 96,921 - EX28DRAFT_4293 0.70 +0.7 96,971 + EX28DRAFT_4293 0.75 +1.2 96,971 + EX28DRAFT_4293 0.75 +1.6 96,971 + EX28DRAFT_4293 0.75 +1.5 96,972 - EX28DRAFT_4293 0.75 +1.4 96,972 - EX28DRAFT_4293 0.75 +2.0
Or see this region's nucleotide sequence