Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4288 and EX28DRAFT_4289 overlap by 4 nucleotides EX28DRAFT_4289 and EX28DRAFT_4290 are separated by 46 nucleotides EX28DRAFT_4290 and EX28DRAFT_4291 are separated by 152 nucleotides EX28DRAFT_4291 and EX28DRAFT_4292 are separated by 119 nucleotides EX28DRAFT_4292 and EX28DRAFT_4293 are separated by 116 nucleotides
EX28DRAFT_4288: EX28DRAFT_4288 - ABC-type branched-chain amino acid transport system, permease component, at 91,864 to 93,141
_4288
EX28DRAFT_4289: EX28DRAFT_4289 - Branched-chain amino acid ABC-type transport system, permease components, at 93,138 to 94,064
_4289
EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220
_4290
EX28DRAFT_4291: EX28DRAFT_4291 - hypothetical protein, at 95,373 to 95,525
_4291
EX28DRAFT_4292: EX28DRAFT_4292 - Acetyltransferase (GNAT) domain, at 95,645 to 96,034
_4292
EX28DRAFT_4293: EX28DRAFT_4293 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 96,151 to 97,245
_4293
Position (kb)
94
95
96 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 93.141 kb on + strand at 93.227 kb on + strand at 93.228 kb on - strand at 93.228 kb on - strand at 93.230 kb on - strand at 93.244 kb on + strand, within EX28DRAFT_4289 at 93.367 kb on + strand, within EX28DRAFT_4289 at 93.454 kb on - strand, within EX28DRAFT_4289 at 93.569 kb on + strand, within EX28DRAFT_4289 at 93.570 kb on - strand, within EX28DRAFT_4289 at 93.570 kb on - strand, within EX28DRAFT_4289 at 93.704 kb on - strand, within EX28DRAFT_4289 at 93.899 kb on + strand, within EX28DRAFT_4289 at 93.910 kb on + strand, within EX28DRAFT_4289 at 93.910 kb on + strand, within EX28DRAFT_4289 at 93.911 kb on - strand, within EX28DRAFT_4289 at 93.911 kb on - strand, within EX28DRAFT_4289 at 93.915 kb on - strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.977 kb on + strand at 93.977 kb on + strand at 93.977 kb on + strand at 93.978 kb on - strand at 94.001 kb on - strand at 94.045 kb on + strand at 94.064 kb on + strand at 94.079 kb on - strand at 94.149 kb on + strand at 94.311 kb on - strand, within EX28DRAFT_4290 at 94.326 kb on - strand, within EX28DRAFT_4290 at 94.326 kb on - strand, within EX28DRAFT_4290 at 94.544 kb on + strand, within EX28DRAFT_4290 at 94.557 kb on - strand, within EX28DRAFT_4290 at 94.559 kb on + strand, within EX28DRAFT_4290 at 94.559 kb on + strand, within EX28DRAFT_4290 at 94.760 kb on + strand, within EX28DRAFT_4290 at 94.760 kb on + strand, within EX28DRAFT_4290 at 94.761 kb on - strand, within EX28DRAFT_4290 at 94.761 kb on - strand, within EX28DRAFT_4290 at 94.886 kb on + strand, within EX28DRAFT_4290 at 94.887 kb on - strand, within EX28DRAFT_4290 at 94.937 kb on + strand, within EX28DRAFT_4290 at 95.006 kb on + strand, within EX28DRAFT_4290 at 95.262 kb on + strand at 95.263 kb on - strand at 95.271 kb on + strand at 95.272 kb on - strand at 95.396 kb on - strand, within EX28DRAFT_4291 at 95.597 kb on + strand at 95.597 kb on + strand at 95.598 kb on - strand at 95.606 kb on + strand at 95.617 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.639 kb on + strand at 95.643 kb on + strand at 95.720 kb on + strand, within EX28DRAFT_4292 at 95.721 kb on - strand, within EX28DRAFT_4292 at 95.762 kb on + strand, within EX28DRAFT_4292 at 95.762 kb on + strand, within EX28DRAFT_4292 at 95.777 kb on - strand, within EX28DRAFT_4292 at 95.883 kb on - strand, within EX28DRAFT_4292 at 95.887 kb on - strand, within EX28DRAFT_4292 at 95.887 kb on - strand, within EX28DRAFT_4292
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 93,141 + +1.0 93,227 + +1.0 93,228 - +1.8 93,228 - +1.9 93,230 - +2.1 93,244 + EX28DRAFT_4289 0.11 +1.7 93,367 + EX28DRAFT_4289 0.25 -0.2 93,454 - EX28DRAFT_4289 0.34 +1.6 93,569 + EX28DRAFT_4289 0.46 +1.3 93,570 - EX28DRAFT_4289 0.47 +1.6 93,570 - EX28DRAFT_4289 0.47 +1.8 93,704 - EX28DRAFT_4289 0.61 +2.2 93,899 + EX28DRAFT_4289 0.82 +2.0 93,910 + EX28DRAFT_4289 0.83 +1.7 93,910 + EX28DRAFT_4289 0.83 +2.4 93,911 - EX28DRAFT_4289 0.83 +2.9 93,911 - EX28DRAFT_4289 0.83 +2.1 93,915 - EX28DRAFT_4289 0.84 +1.1 93,925 + EX28DRAFT_4289 0.85 +1.7 93,925 + EX28DRAFT_4289 0.85 +1.3 93,925 + EX28DRAFT_4289 0.85 -0.3 93,925 + EX28DRAFT_4289 0.85 +0.7 93,925 + EX28DRAFT_4289 0.85 +1.4 93,925 + EX28DRAFT_4289 0.85 +1.7 93,925 + EX28DRAFT_4289 0.85 +0.9 93,926 - EX28DRAFT_4289 0.85 +1.1 93,926 - EX28DRAFT_4289 0.85 +1.1 93,926 - EX28DRAFT_4289 0.85 +2.0 93,926 - EX28DRAFT_4289 0.85 +1.5 93,926 - EX28DRAFT_4289 0.85 +1.6 93,927 + EX28DRAFT_4289 0.85 +1.5 93,927 + EX28DRAFT_4289 0.85 +1.5 93,927 + EX28DRAFT_4289 0.85 +1.6 93,927 + EX28DRAFT_4289 0.85 +1.1 93,977 + +1.7 93,977 + -0.5 93,977 + +2.1 93,978 - +1.2 94,001 - +0.2 94,045 + +1.9 94,064 + +1.6 94,079 - +1.4 94,149 + +1.6 94,311 - EX28DRAFT_4290 0.18 -2.4 94,326 - EX28DRAFT_4290 0.19 -1.0 94,326 - EX28DRAFT_4290 0.19 -2.4 94,544 + EX28DRAFT_4290 0.39 +1.9 94,557 - EX28DRAFT_4290 0.40 -0.6 94,559 + EX28DRAFT_4290 0.40 +1.3 94,559 + EX28DRAFT_4290 0.40 +1.7 94,760 + EX28DRAFT_4290 0.58 +1.3 94,760 + EX28DRAFT_4290 0.58 +0.9 94,761 - EX28DRAFT_4290 0.59 +0.5 94,761 - EX28DRAFT_4290 0.59 +1.1 94,886 + EX28DRAFT_4290 0.70 +1.8 94,887 - EX28DRAFT_4290 0.70 +1.1 94,937 + EX28DRAFT_4290 0.74 +1.8 95,006 + EX28DRAFT_4290 0.81 +1.5 95,262 + +1.2 95,263 - -2.3 95,271 + +2.3 95,272 - -2.7 95,396 - EX28DRAFT_4291 0.15 -3.6 95,597 + +0.3 95,597 + +0.8 95,598 - -0.9 95,606 + -2.5 95,617 + -0.4 95,639 + -0.2 95,639 + -3.4 95,639 + -2.0 95,639 + -0.4 95,639 + -1.0 95,643 + -1.0 95,720 + EX28DRAFT_4292 0.19 -2.8 95,721 - EX28DRAFT_4292 0.19 -5.1 95,762 + EX28DRAFT_4292 0.30 -2.3 95,762 + EX28DRAFT_4292 0.30 -0.2 95,777 - EX28DRAFT_4292 0.34 -4.4 95,883 - EX28DRAFT_4292 0.61 -4.2 95,887 - EX28DRAFT_4292 0.62 -4.3 95,887 - EX28DRAFT_4292 0.62 -4.3
Or see this region's nucleotide sequence