Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4288 and EX28DRAFT_4289 overlap by 4 nucleotides EX28DRAFT_4289 and EX28DRAFT_4290 are separated by 46 nucleotides
EX28DRAFT_4288: EX28DRAFT_4288 - ABC-type branched-chain amino acid transport system, permease component, at 91,864 to 93,141
_4288
EX28DRAFT_4289: EX28DRAFT_4289 - Branched-chain amino acid ABC-type transport system, permease components, at 93,138 to 94,064
_4289
EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220
_4290
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 92.348 kb on + strand, within EX28DRAFT_4288 at 92.349 kb on - strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.379 kb on - strand, within EX28DRAFT_4288 at 92.663 kb on + strand, within EX28DRAFT_4288 at 92.664 kb on - strand, within EX28DRAFT_4288 at 92.666 kb on + strand, within EX28DRAFT_4288 at 92.688 kb on + strand, within EX28DRAFT_4288 at 92.705 kb on + strand, within EX28DRAFT_4288 at 92.780 kb on + strand, within EX28DRAFT_4288 at 92.780 kb on + strand, within EX28DRAFT_4288 at 92.887 kb on - strand, within EX28DRAFT_4288 at 92.998 kb on + strand, within EX28DRAFT_4288 at 93.141 kb on + strand at 93.227 kb on + strand at 93.228 kb on - strand at 93.228 kb on - strand at 93.230 kb on - strand at 93.244 kb on + strand, within EX28DRAFT_4289 at 93.367 kb on + strand, within EX28DRAFT_4289 at 93.454 kb on - strand, within EX28DRAFT_4289 at 93.569 kb on + strand, within EX28DRAFT_4289 at 93.570 kb on - strand, within EX28DRAFT_4289 at 93.570 kb on - strand, within EX28DRAFT_4289 at 93.704 kb on - strand, within EX28DRAFT_4289 at 93.899 kb on + strand, within EX28DRAFT_4289 at 93.910 kb on + strand, within EX28DRAFT_4289 at 93.910 kb on + strand, within EX28DRAFT_4289 at 93.911 kb on - strand, within EX28DRAFT_4289 at 93.911 kb on - strand, within EX28DRAFT_4289 at 93.915 kb on - strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.977 kb on + strand at 93.977 kb on + strand at 93.977 kb on + strand at 93.978 kb on - strand at 94.001 kb on - strand at 94.045 kb on + strand at 94.064 kb on + strand at 94.079 kb on - strand at 94.149 kb on + strand at 94.311 kb on - strand, within EX28DRAFT_4290 at 94.326 kb on - strand, within EX28DRAFT_4290 at 94.326 kb on - strand, within EX28DRAFT_4290 at 94.544 kb on + strand, within EX28DRAFT_4290 at 94.557 kb on - strand, within EX28DRAFT_4290 at 94.559 kb on + strand, within EX28DRAFT_4290 at 94.559 kb on + strand, within EX28DRAFT_4290 at 94.760 kb on + strand, within EX28DRAFT_4290 at 94.760 kb on + strand, within EX28DRAFT_4290 at 94.761 kb on - strand, within EX28DRAFT_4290 at 94.761 kb on - strand, within EX28DRAFT_4290 at 94.886 kb on + strand, within EX28DRAFT_4290 at 94.887 kb on - strand, within EX28DRAFT_4290 at 94.937 kb on + strand, within EX28DRAFT_4290 at 95.006 kb on + strand, within EX28DRAFT_4290
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 92,348 + EX28DRAFT_4288 0.38 +2.8 92,349 - EX28DRAFT_4288 0.38 +1.8 92,378 + EX28DRAFT_4288 0.40 +1.7 92,378 + EX28DRAFT_4288 0.40 +1.1 92,378 + EX28DRAFT_4288 0.40 +1.3 92,378 + EX28DRAFT_4288 0.40 +1.5 92,379 - EX28DRAFT_4288 0.40 +1.6 92,663 + EX28DRAFT_4288 0.63 +1.2 92,664 - EX28DRAFT_4288 0.63 +1.7 92,666 + EX28DRAFT_4288 0.63 +1.4 92,688 + EX28DRAFT_4288 0.64 +1.9 92,705 + EX28DRAFT_4288 0.66 +0.4 92,780 + EX28DRAFT_4288 0.72 +1.5 92,780 + EX28DRAFT_4288 0.72 +1.5 92,887 - EX28DRAFT_4288 0.80 +1.1 92,998 + EX28DRAFT_4288 0.89 +1.3 93,141 + +1.0 93,227 + +1.0 93,228 - +1.8 93,228 - +1.9 93,230 - +2.1 93,244 + EX28DRAFT_4289 0.11 +1.7 93,367 + EX28DRAFT_4289 0.25 -0.2 93,454 - EX28DRAFT_4289 0.34 +1.6 93,569 + EX28DRAFT_4289 0.46 +1.3 93,570 - EX28DRAFT_4289 0.47 +1.6 93,570 - EX28DRAFT_4289 0.47 +1.8 93,704 - EX28DRAFT_4289 0.61 +2.2 93,899 + EX28DRAFT_4289 0.82 +2.0 93,910 + EX28DRAFT_4289 0.83 +1.7 93,910 + EX28DRAFT_4289 0.83 +2.4 93,911 - EX28DRAFT_4289 0.83 +2.9 93,911 - EX28DRAFT_4289 0.83 +2.1 93,915 - EX28DRAFT_4289 0.84 +1.1 93,925 + EX28DRAFT_4289 0.85 +1.7 93,925 + EX28DRAFT_4289 0.85 +1.3 93,925 + EX28DRAFT_4289 0.85 -0.3 93,925 + EX28DRAFT_4289 0.85 +0.7 93,925 + EX28DRAFT_4289 0.85 +1.4 93,925 + EX28DRAFT_4289 0.85 +1.7 93,925 + EX28DRAFT_4289 0.85 +0.9 93,926 - EX28DRAFT_4289 0.85 +1.1 93,926 - EX28DRAFT_4289 0.85 +1.1 93,926 - EX28DRAFT_4289 0.85 +2.0 93,926 - EX28DRAFT_4289 0.85 +1.5 93,926 - EX28DRAFT_4289 0.85 +1.6 93,927 + EX28DRAFT_4289 0.85 +1.5 93,927 + EX28DRAFT_4289 0.85 +1.5 93,927 + EX28DRAFT_4289 0.85 +1.6 93,927 + EX28DRAFT_4289 0.85 +1.1 93,977 + +1.7 93,977 + -0.5 93,977 + +2.1 93,978 - +1.2 94,001 - +0.2 94,045 + +1.9 94,064 + +1.6 94,079 - +1.4 94,149 + +1.6 94,311 - EX28DRAFT_4290 0.18 -2.4 94,326 - EX28DRAFT_4290 0.19 -1.0 94,326 - EX28DRAFT_4290 0.19 -2.4 94,544 + EX28DRAFT_4290 0.39 +1.9 94,557 - EX28DRAFT_4290 0.40 -0.6 94,559 + EX28DRAFT_4290 0.40 +1.3 94,559 + EX28DRAFT_4290 0.40 +1.7 94,760 + EX28DRAFT_4290 0.58 +1.3 94,760 + EX28DRAFT_4290 0.58 +0.9 94,761 - EX28DRAFT_4290 0.59 +0.5 94,761 - EX28DRAFT_4290 0.59 +1.1 94,886 + EX28DRAFT_4290 0.70 +1.8 94,887 - EX28DRAFT_4290 0.70 +1.1 94,937 + EX28DRAFT_4290 0.74 +1.8 95,006 + EX28DRAFT_4290 0.81 +1.5
Or see this region's nucleotide sequence