Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4287

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4285 and EX28DRAFT_4286 are separated by 254 nucleotidesEX28DRAFT_4286 and EX28DRAFT_4287 are separated by 1 nucleotidesEX28DRAFT_4287 and EX28DRAFT_4288 overlap by 4 nucleotides EX28DRAFT_4285: EX28DRAFT_4285 - ABC-type sugar transport system, periplasmic component, at 88,814 to 90,130 _4285 EX28DRAFT_4286: EX28DRAFT_4286 - ABC-type branched-chain amino acid transport systems, ATPase component, at 90,385 to 91,098 _4286 EX28DRAFT_4287: EX28DRAFT_4287 - ABC-type branched-chain amino acid transport systems, ATPase component, at 91,100 to 91,867 _4287 EX28DRAFT_4288: EX28DRAFT_4288 - ABC-type branched-chain amino acid transport system, permease component, at 91,864 to 93,141 _4288 Position (kb) 91 92Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 90.144 kb on - strandat 90.144 kb on - strandat 90.174 kb on + strandat 90.175 kb on - strandat 90.234 kb on + strandat 90.235 kb on - strandat 90.382 kb on + strandat 90.382 kb on + strandat 90.398 kb on + strandat 90.561 kb on + strand, within EX28DRAFT_4286at 90.738 kb on - strand, within EX28DRAFT_4286at 90.738 kb on - strand, within EX28DRAFT_4286at 90.739 kb on + strand, within EX28DRAFT_4286at 90.739 kb on + strand, within EX28DRAFT_4286at 90.740 kb on - strand, within EX28DRAFT_4286at 90.901 kb on - strand, within EX28DRAFT_4286at 91.102 kb on - strandat 91.102 kb on - strandat 91.194 kb on + strand, within EX28DRAFT_4287at 91.194 kb on + strand, within EX28DRAFT_4287at 91.194 kb on + strand, within EX28DRAFT_4287at 91.194 kb on + strand, within EX28DRAFT_4287at 91.195 kb on - strand, within EX28DRAFT_4287at 91.199 kb on - strand, within EX28DRAFT_4287at 91.704 kb on + strand, within EX28DRAFT_4287at 91.853 kb on + strandat 91.853 kb on + strandat 91.988 kb on + strandat 92.348 kb on + strand, within EX28DRAFT_4288at 92.349 kb on - strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.379 kb on - strand, within EX28DRAFT_4288at 92.663 kb on + strand, within EX28DRAFT_4288at 92.664 kb on - strand, within EX28DRAFT_4288at 92.666 kb on + strand, within EX28DRAFT_4288at 92.688 kb on + strand, within EX28DRAFT_4288at 92.705 kb on + strand, within EX28DRAFT_4288at 92.780 kb on + strand, within EX28DRAFT_4288at 92.780 kb on + strand, within EX28DRAFT_4288

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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90,144 - +0.1
90,144 - +0.3
90,174 + +0.3
90,175 - -0.2
90,234 + -0.0
90,235 - -1.3
90,382 + -3.9
90,382 + +0.3
90,398 + +1.8
90,561 + EX28DRAFT_4286 0.25 +1.9
90,738 - EX28DRAFT_4286 0.49 +1.9
90,738 - EX28DRAFT_4286 0.49 +1.7
90,739 + EX28DRAFT_4286 0.50 +1.3
90,739 + EX28DRAFT_4286 0.50 -2.1
90,740 - EX28DRAFT_4286 0.50 +1.8
90,901 - EX28DRAFT_4286 0.72 +2.4
91,102 - -0.4
91,102 - -0.1
91,194 + EX28DRAFT_4287 0.12 +2.2
91,194 + EX28DRAFT_4287 0.12 +1.8
91,194 + EX28DRAFT_4287 0.12 +1.7
91,194 + EX28DRAFT_4287 0.12 +1.6
91,195 - EX28DRAFT_4287 0.12 +1.8
91,199 - EX28DRAFT_4287 0.13 +1.7
91,704 + EX28DRAFT_4287 0.79 +1.5
91,853 + -1.3
91,853 + +0.4
91,988 + +2.5
92,348 + EX28DRAFT_4288 0.38 +2.8
92,349 - EX28DRAFT_4288 0.38 +1.8
92,378 + EX28DRAFT_4288 0.40 +1.7
92,378 + EX28DRAFT_4288 0.40 +1.1
92,378 + EX28DRAFT_4288 0.40 +1.3
92,378 + EX28DRAFT_4288 0.40 +1.5
92,379 - EX28DRAFT_4288 0.40 +1.6
92,663 + EX28DRAFT_4288 0.63 +1.2
92,664 - EX28DRAFT_4288 0.63 +1.7
92,666 + EX28DRAFT_4288 0.63 +1.4
92,688 + EX28DRAFT_4288 0.64 +1.9
92,705 + EX28DRAFT_4288 0.66 +0.4
92,780 + EX28DRAFT_4288 0.72 +1.5
92,780 + EX28DRAFT_4288 0.72 +1.5

Or see this region's nucleotide sequence