Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4280 and EX28DRAFT_4281 overlap by 17 nucleotides EX28DRAFT_4281 and EX28DRAFT_4282 overlap by 4 nucleotides EX28DRAFT_4282 and EX28DRAFT_4283 are separated by 1 nucleotides EX28DRAFT_4283 and EX28DRAFT_4284 overlap by 4 nucleotides
EX28DRAFT_4280: EX28DRAFT_4280 - Protein of unknown function (DUF2756), at 84,781 to 85,158
_4280
EX28DRAFT_4281: EX28DRAFT_4281 - Glycerophosphoryl diester phosphodiesterase, at 85,142 to 85,888
_4281
EX28DRAFT_4282: EX28DRAFT_4282 - ABC-type sugar transport systems, ATPase components, at 85,885 to 86,955
_4282
EX28DRAFT_4283: EX28DRAFT_4283 - ABC-type sugar transport system, permease component, at 86,957 to 87,802
_4283
EX28DRAFT_4284: EX28DRAFT_4284 - ABC-type sugar transport systems, permease components, at 87,799 to 88,716
_4284
Position (kb) 85
86
87 Strain fitness (log2 ratio) -1
0
1 at 84.942 kb on + strand, within EX28DRAFT_4280 at 85.137 kb on + strand at 85.143 kb on + strand at 85.143 kb on + strand at 85.144 kb on - strand at 85.156 kb on + strand at 85.252 kb on - strand, within EX28DRAFT_4281 at 85.262 kb on - strand, within EX28DRAFT_4281 at 85.720 kb on + strand, within EX28DRAFT_4281 at 85.840 kb on + strand at 85.841 kb on - strand at 86.288 kb on + strand, within EX28DRAFT_4282 at 86.387 kb on + strand, within EX28DRAFT_4282 at 86.387 kb on + strand, within EX28DRAFT_4282 at 86.388 kb on - strand, within EX28DRAFT_4282 at 86.703 kb on - strand, within EX28DRAFT_4282 at 87.174 kb on + strand, within EX28DRAFT_4283 at 87.175 kb on - strand, within EX28DRAFT_4283 at 87.178 kb on + strand, within EX28DRAFT_4283 at 87.178 kb on + strand, within EX28DRAFT_4283 at 87.178 kb on + strand, within EX28DRAFT_4283 at 87.360 kb on - strand, within EX28DRAFT_4283 at 87.418 kb on + strand, within EX28DRAFT_4283 at 87.541 kb on + strand, within EX28DRAFT_4283 at 87.542 kb on - strand, within EX28DRAFT_4283 at 87.720 kb on + strand at 87.721 kb on - strand at 87.763 kb on + strand at 87.763 kb on + strand at 87.764 kb on - strand at 87.816 kb on + strand at 87.828 kb on - strand at 87.934 kb on - strand, within EX28DRAFT_4284 at 87.935 kb on + strand, within EX28DRAFT_4284 at 87.936 kb on - strand, within EX28DRAFT_4284 at 87.936 kb on - strand, within EX28DRAFT_4284 at 87.940 kb on - strand, within EX28DRAFT_4284
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 84,942 + EX28DRAFT_4280 0.43 +0.6 85,137 + +0.2 85,143 + -0.1 85,143 + +0.3 85,144 - -0.2 85,156 + +0.6 85,252 - EX28DRAFT_4281 0.15 +1.1 85,262 - EX28DRAFT_4281 0.16 +0.2 85,720 + EX28DRAFT_4281 0.77 -0.0 85,840 + -0.3 85,841 - +0.6 86,288 + EX28DRAFT_4282 0.38 +0.1 86,387 + EX28DRAFT_4282 0.47 +0.3 86,387 + EX28DRAFT_4282 0.47 +0.5 86,388 - EX28DRAFT_4282 0.47 -0.8 86,703 - EX28DRAFT_4282 0.76 -1.3 87,174 + EX28DRAFT_4283 0.26 -1.0 87,175 - EX28DRAFT_4283 0.26 -0.4 87,178 + EX28DRAFT_4283 0.26 +0.6 87,178 + EX28DRAFT_4283 0.26 -0.2 87,178 + EX28DRAFT_4283 0.26 +0.1 87,360 - EX28DRAFT_4283 0.48 -1.0 87,418 + EX28DRAFT_4283 0.54 -0.1 87,541 + EX28DRAFT_4283 0.69 -0.2 87,542 - EX28DRAFT_4283 0.69 +1.1 87,720 + +0.2 87,721 - -0.4 87,763 + +0.2 87,763 + +0.2 87,764 - -0.3 87,816 + +0.0 87,828 - -0.6 87,934 - EX28DRAFT_4284 0.15 +0.7 87,935 + EX28DRAFT_4284 0.15 -0.6 87,936 - EX28DRAFT_4284 0.15 +0.0 87,936 - EX28DRAFT_4284 0.15 -0.3 87,940 - EX28DRAFT_4284 0.15 -0.4
Or see this region's nucleotide sequence