Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4248

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4246 and EX28DRAFT_4247 are separated by 3 nucleotidesEX28DRAFT_4247 and EX28DRAFT_4248 are separated by 2 nucleotidesEX28DRAFT_4248 and EX28DRAFT_4249 are separated by 113 nucleotides EX28DRAFT_4246: EX28DRAFT_4246 - excinuclease ABC, A subunit, at 52,582 to 55,404 _4246 EX28DRAFT_4247: EX28DRAFT_4247 - Uncharacterized protein conserved in bacteria, at 55,408 to 55,761 _4247 EX28DRAFT_4248: EX28DRAFT_4248 - secondary thiamine-phosphate synthase enzyme, at 55,764 to 56,180 _4248 EX28DRAFT_4249: EX28DRAFT_4249 - HAD superfamily (subfamily IIIB) phosphatase, TIGR01672, at 56,294 to 57,007 _4249 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1at 54.781 kb on - strand, within EX28DRAFT_4246at 54.781 kb on - strand, within EX28DRAFT_4246at 54.859 kb on + strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.892 kb on + strand, within EX28DRAFT_4246at 54.916 kb on - strand, within EX28DRAFT_4246at 54.919 kb on + strand, within EX28DRAFT_4246at 54.920 kb on - strand, within EX28DRAFT_4246at 55.006 kb on - strand, within EX28DRAFT_4246at 55.028 kb on + strand, within EX28DRAFT_4246at 55.039 kb on + strand, within EX28DRAFT_4246at 55.039 kb on + strand, within EX28DRAFT_4246at 55.142 kb on - strandat 55.234 kb on - strandat 55.402 kb on + strandat 55.464 kb on - strand, within EX28DRAFT_4247at 55.482 kb on - strand, within EX28DRAFT_4247at 55.485 kb on - strand, within EX28DRAFT_4247at 55.485 kb on - strand, within EX28DRAFT_4247at 55.517 kb on + strand, within EX28DRAFT_4247at 55.674 kb on + strand, within EX28DRAFT_4247at 55.745 kb on - strandat 55.776 kb on + strandat 55.776 kb on + strandat 55.777 kb on - strandat 55.793 kb on + strandat 55.907 kb on + strand, within EX28DRAFT_4248at 55.907 kb on + strand, within EX28DRAFT_4248at 55.952 kb on - strand, within EX28DRAFT_4248at 56.154 kb on + strandat 56.154 kb on + strandat 56.213 kb on - strandat 56.265 kb on - strandat 56.295 kb on + strandat 56.298 kb on + strandat 56.298 kb on + strandat 56.375 kb on + strand, within EX28DRAFT_4249at 56.376 kb on - strand, within EX28DRAFT_4249at 56.376 kb on - strand, within EX28DRAFT_4249at 56.444 kb on + strand, within EX28DRAFT_4249at 56.445 kb on - strand, within EX28DRAFT_4249at 56.445 kb on - strand, within EX28DRAFT_4249at 56.445 kb on - strand, within EX28DRAFT_4249at 56.518 kb on + strand, within EX28DRAFT_4249at 56.607 kb on + strand, within EX28DRAFT_4249at 56.607 kb on + strand, within EX28DRAFT_4249at 56.607 kb on + strand, within EX28DRAFT_4249at 56.608 kb on - strand, within EX28DRAFT_4249at 56.641 kb on + strand, within EX28DRAFT_4249at 56.725 kb on - strand, within EX28DRAFT_4249at 56.745 kb on + strand, within EX28DRAFT_4249at 56.746 kb on - strand, within EX28DRAFT_4249at 56.956 kb on + strandat 56.957 kb on - strandat 56.969 kb on + strandat 56.969 kb on + strandat 56.970 kb on - strandat 57.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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54,781 - EX28DRAFT_4246 0.78 -0.4
54,781 - EX28DRAFT_4246 0.78 -0.7
54,859 + EX28DRAFT_4246 0.81 -0.7
54,860 - EX28DRAFT_4246 0.81 -1.9
54,860 - EX28DRAFT_4246 0.81 -0.3
54,860 - EX28DRAFT_4246 0.81 -0.8
54,860 - EX28DRAFT_4246 0.81 -1.1
54,892 + EX28DRAFT_4246 0.82 -0.5
54,916 - EX28DRAFT_4246 0.83 -0.3
54,919 + EX28DRAFT_4246 0.83 +1.4
54,920 - EX28DRAFT_4246 0.83 -1.8
55,006 - EX28DRAFT_4246 0.86 -1.3
55,028 + EX28DRAFT_4246 0.87 -1.6
55,039 + EX28DRAFT_4246 0.87 -2.2
55,039 + EX28DRAFT_4246 0.87 -0.9
55,142 - -0.4
55,234 - +0.0
55,402 + +0.2
55,464 - EX28DRAFT_4247 0.16 +0.0
55,482 - EX28DRAFT_4247 0.21 +0.2
55,485 - EX28DRAFT_4247 0.22 +0.4
55,485 - EX28DRAFT_4247 0.22 -1.5
55,517 + EX28DRAFT_4247 0.31 +0.0
55,674 + EX28DRAFT_4247 0.75 -0.6
55,745 - +0.4
55,776 + -0.3
55,776 + -1.1
55,777 - -0.2
55,793 + +0.3
55,907 + EX28DRAFT_4248 0.34 -0.1
55,907 + EX28DRAFT_4248 0.34 +1.5
55,952 - EX28DRAFT_4248 0.45 -0.4
56,154 + -0.2
56,154 + +0.4
56,213 - +0.2
56,265 - -0.2
56,295 + -1.0
56,298 + +0.0
56,298 + +0.2
56,375 + EX28DRAFT_4249 0.11 +0.4
56,376 - EX28DRAFT_4249 0.11 -0.2
56,376 - EX28DRAFT_4249 0.11 -0.1
56,444 + EX28DRAFT_4249 0.21 +0.3
56,445 - EX28DRAFT_4249 0.21 -0.0
56,445 - EX28DRAFT_4249 0.21 -0.7
56,445 - EX28DRAFT_4249 0.21 -2.3
56,518 + EX28DRAFT_4249 0.31 -0.3
56,607 + EX28DRAFT_4249 0.44 +0.0
56,607 + EX28DRAFT_4249 0.44 +0.5
56,607 + EX28DRAFT_4249 0.44 +0.3
56,608 - EX28DRAFT_4249 0.44 +0.6
56,641 + EX28DRAFT_4249 0.49 -0.6
56,725 - EX28DRAFT_4249 0.60 -1.4
56,745 + EX28DRAFT_4249 0.63 +0.9
56,746 - EX28DRAFT_4249 0.63 -0.3
56,956 + +0.1
56,957 - +0.6
56,969 + -0.4
56,969 + -0.3
56,970 - +0.0
57,050 + -2.4

Or see this region's nucleotide sequence