Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4244

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4243 and EX28DRAFT_4244 are separated by 646 nucleotidesEX28DRAFT_4244 and EX28DRAFT_4245 are separated by 61 nucleotidesEX28DRAFT_4245 and EX28DRAFT_4246 are separated by 250 nucleotides EX28DRAFT_4243: EX28DRAFT_4243 - Predicted signal transduction protein containing sensor and EAL domains, at 49,246 to 50,811 _4243 EX28DRAFT_4244: EX28DRAFT_4244 - hypothetical protein, at 51,458 to 51,739 _4244 EX28DRAFT_4245: EX28DRAFT_4245 - single stranded DNA-binding protein (ssb), at 51,801 to 52,331 _4245 EX28DRAFT_4246: EX28DRAFT_4246 - excinuclease ABC, A subunit, at 52,582 to 55,404 _4246 Position (kb) 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 50.565 kb on + strand, within EX28DRAFT_4243at 50.565 kb on + strand, within EX28DRAFT_4243at 50.565 kb on + strand, within EX28DRAFT_4243at 50.567 kb on + strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.687 kb on - strandat 50.754 kb on + strandat 50.754 kb on + strandat 50.755 kb on - strandat 50.758 kb on + strandat 50.758 kb on + strandat 50.758 kb on + strandat 50.759 kb on - strandat 50.759 kb on - strandat 50.759 kb on - strandat 50.759 kb on - strandat 50.774 kb on - strandat 50.821 kb on + strandat 50.846 kb on + strandat 50.849 kb on + strandat 50.922 kb on - strandat 50.925 kb on - strandat 51.097 kb on - strandat 51.331 kb on + strandat 51.673 kb on + strand, within EX28DRAFT_4244at 51.673 kb on + strand, within EX28DRAFT_4244at 51.674 kb on - strand, within EX28DRAFT_4244at 51.733 kb on + strandat 51.734 kb on - strandat 52.509 kb on + strandat 52.510 kb on - strandat 52.510 kb on - strandat 52.510 kb on - strandat 52.630 kb on - strandat 52.717 kb on + strandat 52.738 kb on + strandat 52.739 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
50,565 + EX28DRAFT_4243 0.84 +0.5
50,565 + EX28DRAFT_4243 0.84 -0.3
50,565 + EX28DRAFT_4243 0.84 -0.5
50,567 + EX28DRAFT_4243 0.84 -0.5
50,568 - EX28DRAFT_4243 0.84 +0.5
50,568 - EX28DRAFT_4243 0.84 -1.9
50,568 - EX28DRAFT_4243 0.84 -0.7
50,568 - EX28DRAFT_4243 0.84 -0.0
50,687 - -0.9
50,754 + -0.7
50,754 + -0.2
50,755 - -0.3
50,758 + -0.2
50,758 + -0.4
50,758 + +0.3
50,759 - +0.9
50,759 - -0.7
50,759 - -0.6
50,759 - +0.1
50,774 - -2.1
50,821 + -0.1
50,846 + -0.1
50,849 + +0.4
50,922 - +0.2
50,925 - -1.4
51,097 - -0.1
51,331 + +0.3
51,673 + EX28DRAFT_4244 0.76 +1.6
51,673 + EX28DRAFT_4244 0.76 -0.0
51,674 - EX28DRAFT_4244 0.77 +0.5
51,733 + -4.5
51,734 - +0.1
52,509 + -0.8
52,510 - -0.3
52,510 - -0.2
52,510 - -0.1
52,630 - -0.8
52,717 + -0.9
52,738 + +0.3
52,739 - -0.3

Or see this region's nucleotide sequence