Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4239

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4238 and EX28DRAFT_4239 are separated by 150 nucleotidesEX28DRAFT_4239 and EX28DRAFT_4240 are separated by 294 nucleotides EX28DRAFT_4238: EX28DRAFT_4238 - Na+/H+ antiporter, bacterial form, at 43,950 to 45,596 _4238 EX28DRAFT_4239: EX28DRAFT_4239 - Permeases, at 45,747 to 47,096 _4239 EX28DRAFT_4240: EX28DRAFT_4240 - Glutathione S-transferase, at 47,391 to 48,062 _4240 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 44.899 kb on + strand, within EX28DRAFT_4238at 44.899 kb on + strand, within EX28DRAFT_4238at 44.929 kb on - strand, within EX28DRAFT_4238at 44.929 kb on - strand, within EX28DRAFT_4238at 45.284 kb on - strand, within EX28DRAFT_4238at 45.528 kb on + strandat 45.576 kb on + strandat 45.621 kb on + strandat 45.621 kb on + strandat 45.622 kb on - strandat 45.622 kb on - strandat 45.622 kb on - strandat 45.622 kb on - strandat 45.626 kb on - strandat 45.626 kb on - strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.654 kb on + strandat 45.654 kb on + strandat 45.655 kb on - strandat 45.655 kb on - strandat 45.748 kb on + strandat 45.749 kb on - strandat 45.749 kb on - strandat 45.749 kb on - strandat 45.749 kb on - strandat 45.749 kb on - strandat 45.749 kb on - strandat 45.819 kb on - strandat 45.819 kb on - strandat 45.819 kb on - strandat 45.872 kb on + strandat 45.994 kb on + strand, within EX28DRAFT_4239at 45.995 kb on - strand, within EX28DRAFT_4239at 45.995 kb on - strand, within EX28DRAFT_4239at 46.034 kb on - strand, within EX28DRAFT_4239at 46.138 kb on + strand, within EX28DRAFT_4239at 46.275 kb on - strand, within EX28DRAFT_4239at 46.275 kb on - strand, within EX28DRAFT_4239at 46.275 kb on - strand, within EX28DRAFT_4239at 46.542 kb on - strand, within EX28DRAFT_4239at 46.542 kb on - strand, within EX28DRAFT_4239at 46.975 kb on + strandat 47.076 kb on - strandat 47.096 kb on + strandat 47.097 kb on - strandat 47.097 kb on - strandat 47.097 kb on - strandat 47.270 kb on - strandat 47.275 kb on - strandat 47.325 kb on + strandat 47.325 kb on + strandat 47.326 kb on - strandat 47.408 kb on + strandat 47.409 kb on - strandat 47.409 kb on - strandat 47.409 kb on - strandat 47.582 kb on + strand, within EX28DRAFT_4240at 47.582 kb on + strand, within EX28DRAFT_4240at 47.606 kb on + strand, within EX28DRAFT_4240at 47.607 kb on - strand, within EX28DRAFT_4240at 47.688 kb on - strand, within EX28DRAFT_4240at 47.768 kb on - strand, within EX28DRAFT_4240at 47.768 kb on - strand, within EX28DRAFT_4240at 47.796 kb on - strand, within EX28DRAFT_4240at 47.836 kb on + strand, within EX28DRAFT_4240at 47.837 kb on - strand, within EX28DRAFT_4240at 47.837 kb on - strand, within EX28DRAFT_4240at 47.847 kb on + strand, within EX28DRAFT_4240at 47.848 kb on - strand, within EX28DRAFT_4240at 47.851 kb on + strand, within EX28DRAFT_4240at 47.852 kb on - strand, within EX28DRAFT_4240at 47.972 kb on - strand, within EX28DRAFT_4240at 48.076 kb on + strandat 48.082 kb on + strandat 48.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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44,899 + EX28DRAFT_4238 0.58 +0.3
44,899 + EX28DRAFT_4238 0.58 +0.1
44,929 - EX28DRAFT_4238 0.59 -0.1
44,929 - EX28DRAFT_4238 0.59 +0.7
45,284 - EX28DRAFT_4238 0.81 -0.1
45,528 + +0.3
45,576 + +0.5
45,621 + +0.1
45,621 + +0.1
45,622 - -0.2
45,622 - -0.2
45,622 - -0.0
45,622 - -0.3
45,626 - -0.3
45,626 - -1.4
45,649 + +0.4
45,649 + +0.7
45,649 + +0.3
45,654 + +0.1
45,654 + +0.1
45,655 - -0.1
45,655 - +0.4
45,748 + -1.4
45,749 - -0.9
45,749 - +0.4
45,749 - -0.2
45,749 - -0.0
45,749 - +1.3
45,749 - -0.1
45,819 - +0.6
45,819 - +0.1
45,819 - -0.7
45,872 + -0.3
45,994 + EX28DRAFT_4239 0.18 -0.1
45,995 - EX28DRAFT_4239 0.18 +1.2
45,995 - EX28DRAFT_4239 0.18 -0.3
46,034 - EX28DRAFT_4239 0.21 +1.0
46,138 + EX28DRAFT_4239 0.29 +0.7
46,275 - EX28DRAFT_4239 0.39 +0.1
46,275 - EX28DRAFT_4239 0.39 +0.5
46,275 - EX28DRAFT_4239 0.39 +0.3
46,542 - EX28DRAFT_4239 0.59 -0.5
46,542 - EX28DRAFT_4239 0.59 -0.4
46,975 + +0.5
47,076 - -0.5
47,096 + +1.1
47,097 - +0.2
47,097 - +1.5
47,097 - +0.1
47,270 - +0.7
47,275 - -0.7
47,325 + +0.7
47,325 + +0.7
47,326 - +0.1
47,408 + +0.1
47,409 - +0.6
47,409 - +0.3
47,409 - +0.5
47,582 + EX28DRAFT_4240 0.28 -0.0
47,582 + EX28DRAFT_4240 0.28 -0.6
47,606 + EX28DRAFT_4240 0.32 +0.4
47,607 - EX28DRAFT_4240 0.32 +0.1
47,688 - EX28DRAFT_4240 0.44 +1.1
47,768 - EX28DRAFT_4240 0.56 +0.0
47,768 - EX28DRAFT_4240 0.56 -1.8
47,796 - EX28DRAFT_4240 0.60 +0.4
47,836 + EX28DRAFT_4240 0.66 -0.1
47,837 - EX28DRAFT_4240 0.66 -0.4
47,837 - EX28DRAFT_4240 0.66 -0.1
47,847 + EX28DRAFT_4240 0.68 -0.6
47,848 - EX28DRAFT_4240 0.68 -0.7
47,851 + EX28DRAFT_4240 0.68 -0.2
47,852 - EX28DRAFT_4240 0.69 +0.6
47,972 - EX28DRAFT_4240 0.86 -0.3
48,076 + +0.4
48,082 + -2.1
48,089 + +0.9

Or see this region's nucleotide sequence