Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4234 and EX28DRAFT_4235 are separated by 32 nucleotides EX28DRAFT_4235 and EX28DRAFT_4236 overlap by 8 nucleotides EX28DRAFT_4236 and EX28DRAFT_4237 are separated by 102 nucleotides
EX28DRAFT_4234: EX28DRAFT_4234 - cation/acetate symporter ActP, at 40,109 to 41,758
_4234
EX28DRAFT_4235: EX28DRAFT_4235 - Putative effector of murein hydrolase, at 41,791 to 42,480
_4235
EX28DRAFT_4236: EX28DRAFT_4236 - Putative effector of murein hydrolase LrgA, at 42,473 to 42,883
_4236
EX28DRAFT_4237: EX28DRAFT_4237 - Transcriptional regulator, at 42,986 to 43,873
_4237
Position (kb) 42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 41.595 kb on - strand at 41.793 kb on - strand at 41.834 kb on - strand at 41.985 kb on + strand, within EX28DRAFT_4235 at 42.225 kb on + strand, within EX28DRAFT_4235 at 42.311 kb on + strand, within EX28DRAFT_4235 at 42.311 kb on + strand, within EX28DRAFT_4235 at 42.328 kb on - strand, within EX28DRAFT_4235 at 42.429 kb on - strand at 42.433 kb on - strand at 42.433 kb on - strand at 42.436 kb on + strand at 42.508 kb on - strand at 42.609 kb on + strand, within EX28DRAFT_4236 at 42.610 kb on - strand, within EX28DRAFT_4236 at 42.716 kb on - strand, within EX28DRAFT_4236 at 42.783 kb on + strand, within EX28DRAFT_4236 at 42.784 kb on - strand, within EX28DRAFT_4236 at 42.918 kb on + strand at 42.919 kb on - strand at 42.920 kb on + strand at 42.920 kb on + strand at 42.921 kb on - strand at 42.921 kb on - strand at 42.952 kb on - strand at 42.966 kb on + strand at 42.966 kb on + strand at 42.969 kb on - strand at 42.993 kb on + strand at 43.040 kb on - strand at 43.565 kb on + strand, within EX28DRAFT_4237 at 43.566 kb on - strand, within EX28DRAFT_4237 at 43.618 kb on + strand, within EX28DRAFT_4237 at 43.715 kb on - strand, within EX28DRAFT_4237 at 43.715 kb on - strand, within EX28DRAFT_4237 at 43.809 kb on - strand at 43.809 kb on - strand at 43.812 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 41,595 - -1.0 41,793 - -0.4 41,834 - -1.1 41,985 + EX28DRAFT_4235 0.28 +0.8 42,225 + EX28DRAFT_4235 0.63 -0.6 42,311 + EX28DRAFT_4235 0.75 +0.4 42,311 + EX28DRAFT_4235 0.75 -0.3 42,328 - EX28DRAFT_4235 0.78 -1.2 42,429 - +0.4 42,433 - -0.4 42,433 - +0.1 42,436 + +0.9 42,508 - +0.3 42,609 + EX28DRAFT_4236 0.33 -0.2 42,610 - EX28DRAFT_4236 0.33 -0.6 42,716 - EX28DRAFT_4236 0.59 +0.1 42,783 + EX28DRAFT_4236 0.75 -0.1 42,784 - EX28DRAFT_4236 0.76 -1.6 42,918 + -0.6 42,919 - +1.6 42,920 + +0.5 42,920 + +0.8 42,921 - -0.5 42,921 - -0.2 42,952 - -2.3 42,966 + -0.4 42,966 + +0.7 42,969 - -0.6 42,993 + -0.6 43,040 - -0.0 43,565 + EX28DRAFT_4237 0.65 +0.7 43,566 - EX28DRAFT_4237 0.65 +0.2 43,618 + EX28DRAFT_4237 0.71 -0.9 43,715 - EX28DRAFT_4237 0.82 -1.6 43,715 - EX28DRAFT_4237 0.82 -0.5 43,809 - -0.8 43,809 - -0.1 43,812 + +1.1
Or see this region's nucleotide sequence