Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4206 and EX28DRAFT_4207 overlap by 8 nucleotides EX28DRAFT_4207 and EX28DRAFT_4208 overlap by 4 nucleotides EX28DRAFT_4208 and EX28DRAFT_4209 are separated by 9 nucleotides EX28DRAFT_4209 and EX28DRAFT_4210 overlap by 4 nucleotides
EX28DRAFT_4206: EX28DRAFT_4206 - Uncharacterized enzyme of phosphonate metabolism, at 13,656 to 14,720
_4206
EX28DRAFT_4207: EX28DRAFT_4207 - Uncharacterized enzyme of phosphonate metabolism, at 14,713 to 15,558
_4207
EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310
_4208
EX28DRAFT_4209: EX28DRAFT_4209 - phosphonate C-P lyase system protein PhnL, at 16,320 to 17,000
_4209
EX28DRAFT_4210: EX28DRAFT_4210 - phosphonate metabolism protein PhnM, at 16,997 to 18,133
_4210
Position (kb) 15
16
17 Strain fitness (log2 ratio) -1
0
1
2 at 14.656 kb on - strand at 14.723 kb on + strand at 14.724 kb on - strand at 14.724 kb on - strand at 14.787 kb on + strand at 14.788 kb on - strand at 14.788 kb on - strand at 14.992 kb on - strand, within EX28DRAFT_4207 at 14.992 kb on - strand, within EX28DRAFT_4207 at 15.223 kb on + strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.254 kb on - strand, within EX28DRAFT_4207 at 15.353 kb on - strand, within EX28DRAFT_4207 at 15.367 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.578 kb on + strand at 15.578 kb on + strand at 15.742 kb on - strand, within EX28DRAFT_4208 at 16.055 kb on + strand, within EX28DRAFT_4208 at 16.309 kb on - strand at 16.309 kb on - strand at 16.331 kb on - strand at 16.331 kb on - strand at 16.339 kb on + strand at 16.340 kb on - strand at 16.340 kb on - strand at 16.343 kb on + strand at 16.344 kb on - strand at 16.344 kb on - strand at 16.394 kb on + strand, within EX28DRAFT_4209 at 16.395 kb on - strand, within EX28DRAFT_4209 at 16.491 kb on + strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.566 kb on - strand, within EX28DRAFT_4209 at 16.831 kb on + strand, within EX28DRAFT_4209 at 16.951 kb on + strand at 17.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 14,656 - -0.0 14,723 + -0.0 14,724 - -0.6 14,724 - +1.0 14,787 + -0.3 14,788 - +0.4 14,788 - -0.4 14,992 - EX28DRAFT_4207 0.33 +0.1 14,992 - EX28DRAFT_4207 0.33 +0.5 15,223 + EX28DRAFT_4207 0.60 +2.4 15,224 - EX28DRAFT_4207 0.60 -1.2 15,224 - EX28DRAFT_4207 0.60 +0.3 15,224 - EX28DRAFT_4207 0.60 -0.3 15,224 - EX28DRAFT_4207 0.60 +0.4 15,254 - EX28DRAFT_4207 0.64 +1.0 15,353 - EX28DRAFT_4207 0.76 +0.0 15,367 + EX28DRAFT_4207 0.77 -0.2 15,460 + EX28DRAFT_4207 0.88 +0.7 15,460 + EX28DRAFT_4207 0.88 +0.9 15,578 + +0.8 15,578 + +0.3 15,742 - EX28DRAFT_4208 0.25 +0.4 16,055 + EX28DRAFT_4208 0.66 +0.5 16,309 - +0.0 16,309 - +0.2 16,331 - +0.7 16,331 - -0.2 16,339 + -0.6 16,340 - +1.8 16,340 - -0.5 16,343 + -0.1 16,344 - +0.2 16,344 - +0.3 16,394 + EX28DRAFT_4209 0.11 -0.5 16,395 - EX28DRAFT_4209 0.11 +0.5 16,491 + EX28DRAFT_4209 0.25 +0.2 16,492 - EX28DRAFT_4209 0.25 +0.2 16,492 - EX28DRAFT_4209 0.25 +0.7 16,565 + EX28DRAFT_4209 0.36 -0.3 16,565 + EX28DRAFT_4209 0.36 -1.3 16,565 + EX28DRAFT_4209 0.36 +0.3 16,565 + EX28DRAFT_4209 0.36 +0.6 16,566 - EX28DRAFT_4209 0.36 -0.1 16,831 + EX28DRAFT_4209 0.75 -0.8 16,951 + +0.5 17,101 + -1.0
Or see this region's nucleotide sequence