Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4198 and EX28DRAFT_4199 are separated by 80 nucleotides EX28DRAFT_4199 and EX28DRAFT_4200 are separated by 136 nucleotides EX28DRAFT_4200 and EX28DRAFT_4201 are separated by 24 nucleotides
EX28DRAFT_4198: EX28DRAFT_4198 - alkylphosphonate utilization operon protein PhnA, at 8,227 to 8,562
_4198
EX28DRAFT_4199: EX28DRAFT_4199 - Uncharacterized protein conserved in bacteria, at 8,643 to 9,080
_4199
EX28DRAFT_4200: EX28DRAFT_4200 - phosphonate ABC transporter, ATP-binding protein, at 9,217 to 10,005
_4200
EX28DRAFT_4201: EX28DRAFT_4201 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 10,030 to 11,046
_4201
Position (kb)
8
9
10 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 7.669 kb on - strand at 7.685 kb on + strand at 7.689 kb on + strand at 7.689 kb on + strand at 7.689 kb on + strand at 7.690 kb on - strand at 7.690 kb on - strand at 7.705 kb on - strand at 7.793 kb on - strand at 7.793 kb on - strand at 7.793 kb on - strand at 7.793 kb on - strand at 7.843 kb on - strand at 7.859 kb on + strand at 7.869 kb on - strand at 7.872 kb on + strand at 7.893 kb on - strand at 7.896 kb on - strand at 7.896 kb on - strand at 7.913 kb on + strand at 7.942 kb on + strand at 7.942 kb on + strand at 7.942 kb on + strand at 7.943 kb on - strand at 7.943 kb on - strand at 8.049 kb on - strand at 8.049 kb on - strand at 8.049 kb on - strand at 8.059 kb on + strand at 8.060 kb on - strand at 8.148 kb on + strand at 8.149 kb on - strand at 8.149 kb on - strand at 8.182 kb on + strand at 8.182 kb on + strand at 8.182 kb on + strand at 8.183 kb on - strand at 8.183 kb on - strand at 8.226 kb on + strand at 8.269 kb on + strand, within EX28DRAFT_4198 at 8.269 kb on + strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.277 kb on + strand, within EX28DRAFT_4198 at 8.405 kb on + strand, within EX28DRAFT_4198 at 8.405 kb on + strand, within EX28DRAFT_4198 at 8.406 kb on - strand, within EX28DRAFT_4198 at 8.494 kb on - strand, within EX28DRAFT_4198 at 8.565 kb on + strand at 8.607 kb on - strand at 8.607 kb on - strand at 8.612 kb on + strand at 8.642 kb on + strand at 8.650 kb on + strand at 8.659 kb on - strand at 8.730 kb on + strand, within EX28DRAFT_4199 at 8.730 kb on + strand, within EX28DRAFT_4199 at 8.731 kb on - strand, within EX28DRAFT_4199 at 8.732 kb on + strand, within EX28DRAFT_4199 at 8.732 kb on + strand, within EX28DRAFT_4199 at 9.032 kb on + strand, within EX28DRAFT_4199 at 9.036 kb on + strand, within EX28DRAFT_4199 at 9.036 kb on + strand, within EX28DRAFT_4199 at 9.037 kb on - strand at 9.057 kb on - strand at 9.199 kb on + strand at 9.200 kb on - strand at 9.268 kb on - strand at 9.365 kb on + strand, within EX28DRAFT_4200 at 9.365 kb on + strand, within EX28DRAFT_4200 at 9.365 kb on + strand, within EX28DRAFT_4200 at 9.376 kb on - strand, within EX28DRAFT_4200 at 9.484 kb on + strand, within EX28DRAFT_4200 at 9.618 kb on - strand, within EX28DRAFT_4200 at 9.860 kb on - strand, within EX28DRAFT_4200 at 9.962 kb on - strand at 10.003 kb on + strand at 10.003 kb on + strand at 10.004 kb on - strand at 10.004 kb on - strand at 10.027 kb on + strand at 10.027 kb on + strand at 10.028 kb on - strand at 10.036 kb on + strand at 10.036 kb on + strand at 10.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 7,669 - +0.3 7,685 + -0.2 7,689 + -0.3 7,689 + -0.2 7,689 + +0.5 7,690 - +0.2 7,690 - -0.4 7,705 - -1.0 7,793 - -0.7 7,793 - -1.5 7,793 - -0.2 7,793 - -0.3 7,843 - -0.8 7,859 + -0.3 7,869 - -1.4 7,872 + +0.7 7,893 - +0.1 7,896 - -0.7 7,896 - +0.3 7,913 + +0.2 7,942 + +0.8 7,942 + -0.6 7,942 + +0.7 7,943 - -0.2 7,943 - -0.0 8,049 - -0.3 8,049 - +0.2 8,049 - -0.3 8,059 + +0.3 8,060 - -1.0 8,148 + -2.1 8,149 - -1.3 8,149 - -0.7 8,182 + +0.4 8,182 + -0.2 8,182 + +0.4 8,183 - -0.2 8,183 - -0.2 8,226 + +0.2 8,269 + EX28DRAFT_4198 0.12 +0.3 8,269 + EX28DRAFT_4198 0.12 -0.3 8,270 - EX28DRAFT_4198 0.13 -0.1 8,270 - EX28DRAFT_4198 0.13 -0.1 8,270 - EX28DRAFT_4198 0.13 -0.4 8,270 - EX28DRAFT_4198 0.13 +0.6 8,270 - EX28DRAFT_4198 0.13 -0.2 8,277 + EX28DRAFT_4198 0.15 +1.1 8,405 + EX28DRAFT_4198 0.53 -1.8 8,405 + EX28DRAFT_4198 0.53 +0.9 8,406 - EX28DRAFT_4198 0.53 -1.1 8,494 - EX28DRAFT_4198 0.79 +0.5 8,565 + -0.6 8,607 - +0.2 8,607 - +0.4 8,612 + +1.5 8,642 + -1.2 8,650 + -0.4 8,659 - +2.4 8,730 + EX28DRAFT_4199 0.20 +0.6 8,730 + EX28DRAFT_4199 0.20 -0.2 8,731 - EX28DRAFT_4199 0.20 +0.4 8,732 + EX28DRAFT_4199 0.20 +0.7 8,732 + EX28DRAFT_4199 0.20 +0.2 9,032 + EX28DRAFT_4199 0.89 +0.7 9,036 + EX28DRAFT_4199 0.90 -2.0 9,036 + EX28DRAFT_4199 0.90 +0.6 9,037 - +0.2 9,057 - +0.1 9,199 + +1.0 9,200 - -0.1 9,268 - -1.1 9,365 + EX28DRAFT_4200 0.19 -0.4 9,365 + EX28DRAFT_4200 0.19 +0.1 9,365 + EX28DRAFT_4200 0.19 +0.4 9,376 - EX28DRAFT_4200 0.20 +0.4 9,484 + EX28DRAFT_4200 0.34 -1.4 9,618 - EX28DRAFT_4200 0.51 -2.6 9,860 - EX28DRAFT_4200 0.81 +0.9 9,962 - +0.6 10,003 + +0.8 10,003 + +0.4 10,004 - -0.1 10,004 - +0.7 10,027 + -0.1 10,027 + +0.2 10,028 - -0.1 10,036 + +0.4 10,036 + -0.9 10,063 - -0.4
Or see this region's nucleotide sequence