Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4179 and EX28DRAFT_4180 are separated by 13 nucleotides EX28DRAFT_4180 and EX28DRAFT_4181 are separated by 94 nucleotides EX28DRAFT_4181 and EX28DRAFT_4182 are separated by 51 nucleotides EX28DRAFT_4182 and EX28DRAFT_4183 are separated by 238 nucleotides
EX28DRAFT_4179: EX28DRAFT_4179 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 162,553 to 164,358
_4179
EX28DRAFT_4180: EX28DRAFT_4180 - conserved hypothetical metal-binding protein, at 164,372 to 164,572
_4180
EX28DRAFT_4181: EX28DRAFT_4181 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 164,667 to 165,257
_4181
EX28DRAFT_4182: EX28DRAFT_4182 - Uncharacterized protein conserved in bacteria, at 165,309 to 165,527
_4182
EX28DRAFT_4183: EX28DRAFT_4183 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 165,766 to 166,572
_4183
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1
2 at 163.830 kb on + strand, within EX28DRAFT_4179 at 163.872 kb on + strand, within EX28DRAFT_4179 at 163.873 kb on - strand, within EX28DRAFT_4179 at 163.873 kb on - strand, within EX28DRAFT_4179 at 163.876 kb on + strand, within EX28DRAFT_4179 at 163.877 kb on - strand, within EX28DRAFT_4179 at 163.882 kb on + strand, within EX28DRAFT_4179 at 163.884 kb on + strand, within EX28DRAFT_4179 at 163.885 kb on - strand, within EX28DRAFT_4179 at 163.962 kb on + strand, within EX28DRAFT_4179 at 163.963 kb on - strand, within EX28DRAFT_4179 at 164.031 kb on + strand, within EX28DRAFT_4179 at 164.379 kb on + strand at 164.383 kb on + strand at 164.384 kb on - strand at 164.432 kb on - strand, within EX28DRAFT_4180 at 164.458 kb on + strand, within EX28DRAFT_4180 at 164.458 kb on + strand, within EX28DRAFT_4180 at 164.459 kb on - strand, within EX28DRAFT_4180 at 164.479 kb on + strand, within EX28DRAFT_4180 at 164.594 kb on - strand at 164.598 kb on + strand at 164.605 kb on + strand at 164.704 kb on - strand at 164.714 kb on + strand at 164.714 kb on + strand at 164.766 kb on + strand, within EX28DRAFT_4181 at 165.256 kb on - strand at 165.448 kb on - strand, within EX28DRAFT_4182 at 165.510 kb on + strand at 165.510 kb on + strand at 165.510 kb on + strand at 165.511 kb on - strand at 165.511 kb on - strand at 165.518 kb on + strand at 165.630 kb on + strand at 165.703 kb on + strand at 165.705 kb on + strand at 165.708 kb on + strand at 165.708 kb on + strand at 165.708 kb on + strand at 165.709 kb on - strand at 165.709 kb on - strand at 165.712 kb on + strand at 165.712 kb on + strand at 165.721 kb on + strand at 165.721 kb on + strand at 165.762 kb on - strand at 165.785 kb on + strand at 166.035 kb on + strand, within EX28DRAFT_4183 at 166.217 kb on - strand, within EX28DRAFT_4183
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 163,830 + EX28DRAFT_4179 0.71 +1.9 163,872 + EX28DRAFT_4179 0.73 -0.3 163,873 - EX28DRAFT_4179 0.73 -0.7 163,873 - EX28DRAFT_4179 0.73 -0.2 163,876 + EX28DRAFT_4179 0.73 +0.1 163,877 - EX28DRAFT_4179 0.73 -0.2 163,882 + EX28DRAFT_4179 0.74 +0.2 163,884 + EX28DRAFT_4179 0.74 +0.1 163,885 - EX28DRAFT_4179 0.74 -0.6 163,962 + EX28DRAFT_4179 0.78 +0.4 163,963 - EX28DRAFT_4179 0.78 -0.5 164,031 + EX28DRAFT_4179 0.82 +0.9 164,379 + -0.8 164,383 + +1.2 164,384 - -0.5 164,432 - EX28DRAFT_4180 0.30 +0.7 164,458 + EX28DRAFT_4180 0.43 +0.5 164,458 + EX28DRAFT_4180 0.43 +0.2 164,459 - EX28DRAFT_4180 0.43 -0.1 164,479 + EX28DRAFT_4180 0.53 -0.8 164,594 - +0.4 164,598 + -0.6 164,605 + +0.4 164,704 - -1.1 164,714 + -0.5 164,714 + -0.4 164,766 + EX28DRAFT_4181 0.17 -1.4 165,256 - -0.1 165,448 - EX28DRAFT_4182 0.63 -0.1 165,510 + -1.3 165,510 + +1.3 165,510 + +0.3 165,511 - +0.4 165,511 - -1.1 165,518 + +0.0 165,630 + -0.6 165,703 + -0.4 165,705 + +0.2 165,708 + +0.1 165,708 + +0.1 165,708 + +0.0 165,709 - +0.5 165,709 - +0.5 165,712 + +1.4 165,712 + -0.3 165,721 + +0.3 165,721 + +0.4 165,762 - -0.5 165,785 + +1.0 166,035 + EX28DRAFT_4183 0.33 +0.6 166,217 - EX28DRAFT_4183 0.56 -1.1
Or see this region's nucleotide sequence